Hg_chrom6_TN10mRNA_11891
Organism: Heterodera glycines Gene Locus: chr6:4574781-4577681 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.202 | 0.749 | 0.431 | 0.526 | 0.621 | 0.782 | 0.807 | 0.508 | 1.205 | 1.42 | 0.334 | 2.692 | 1.789 | 0.847 | 1.28 | 1.622 | 0.861 | 1.002 | 1.304 | 0.947 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11217
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.192
|
0.022
|
0.152
|
0.274
|
0.405
|
0.379
|
0.012
|
0.705
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010390
|
1.000
|
1.000
|
Hsc_gene_7496.t1
|
Hsc_gene_7496.t1
|
— |
P47843.1 Solute carrier family 2, facilitated glucose transporter member 3 [Ovis aries]
|
KAF7632077.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.930|GO:0005575_0.888|GO:0110165_0.887|GO:0009987_0.860|GO:0016020_0.833|GO:0071944_0.809|GO:0005886_0.788|GO:0051179_0.778|GO:0051234_0.775|GO:0006810_0.770|GO:0003674_0.720|GO:0055085_0.701|GO:0005215_0.617|GO:0022857_0.617|GO:0005622_0.556|GO:0008643_0.555|GO:0008645_0.555|GO:0015749_0.555|GO:0034219_0.555|GO:0043226_0.544|GO:0043229_0.523|GO:1904659_0.520
|
IPR003663+119-138_291-301_404-416+|IPR005828+13-479+|IPR005829+124-149+|IPR020846+12-469+|IPR036259+2-483_4-478+|IPR045263+10-489+
|
— |
PF00083+13-479+Sugar_(and_other)_transporter
|
— |
PTHR23503+10-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
552-590
|
1.000
|
1-551
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
64852.370
|
9.535
|
17.000
|
15.593
|
12.373
|
38.475
|
61.525
|
9.492
|
6.102
|
51.864
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
460.461
|
422.957
|
411.555
|
646.852
|
320.250
|
600.899
|
577.189
|
1362.957
|
188.146
|
244.912
|
220.583
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.268
|
0.475
|
0.760
|
-1.047
|
0.925
|
— |
1.080
|
-1.101
|
— | — | — | — | — |
No JSON data available for plots.