Hg_chrom6_TN10mRNA_11893
Organism: Heterodera glycines Gene Locus: chr6:4578307-4581016 Feature type: polypeptideProtein Sequence
Length: 391
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.743 | 1.606 | 0.744 | 0.882 | 1.151 | 1.508 | 0.67 | 1.279 | 1.194 | 1.452 | 1.124 | 0.752 | 1.421 | 0.541 | 1.148 | 1.242 | 0.88 | 0.543 | 0.787 | 0.602 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KKKKRTEDSGKERKKEGGRKDE
|
— | — | — | — |
1-20
|
0.992
|
1.000
|
1.000
|
1.000
|
0.322
|
0.100
|
0.024
|
0.476
|
0.509
|
0.341
|
0.473
|
0.029
|
0.190
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004359
|
2.000
|
1.000
|
Hsc_gene_7495.t1
|
— | — |
Q9SUS4.1 Probable E3 ubiquitin-protein ligase RHA1A [Arabidopsis thaliana]
|
CAA3013718.1 E3 ubiquitin- ligase RING1-like [Olea europaea subsp. europaea]
|
KAH7365982
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.891|GO:0003674_0.679|GO:0009987_0.559|GO:0005575_0.538|GO:0003824_0.537|GO:0110165_0.537|GO:0140096_0.536|GO:0016740_0.522|GO:0016746_0.516|GO:0016755_0.516|GO:0019787_0.516|GO:0008152_0.515|GO:0044238_0.515|GO:0004842_0.513
|
IPR001841+355-388+|IPR013083+332-391+
|
— |
PF13639+355-388+Ring_finger_domain
|
— |
PTHR45676+260-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
170-326
|
2.000
|
1-169;327-391
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
44280.250
|
8.765
|
13.000
|
26.598
|
10.742
|
53.453
|
46.547
|
15.601
|
10.997
|
46.036
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
270.866
|
8.423
|
125.249
|
59.931
|
19.594
|
4.210
|
13.155
|
6.397
|
1103.306
|
268.701
|
626.389
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.667
|
2.699
|
-0.956
|
-1.643
|
-2.204
|
1.646
|
— | — | — |
-4.019
|
— | — | — |