Hg_chrom6_TN10mRNA_11894
Organism: Heterodera glycines Gene Locus: chr6:4582888-4586209 Feature type: polypeptideProtein Sequence
Length: 776
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 1.468 | 0.75 | 0.578 | 1.482 | 1.024 | 0.522 | 0.709 | 1.174 | 1.428 | 1.679 | 1.516 | 1.969 | 0.471 | 0.789 | 0.773 | 0.697 | 0.859 | 1.19 | 1.327 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11219
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RSQKRKP,KRFGTYWKCMSELSNYKRK,KSKKPKKWDKLKNGKTIGQKKAEKVKQKEI
|
— | — | — | — | — |
0.517
|
0.438
|
0.000
|
— |
0.470
|
0.235
|
0.004
|
0.462
|
0.144
|
0.164
|
0.101
|
0.015
|
0.150
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002314
|
1.000
|
3.000
|
Hsc_gene_7493.t1;Hsc_gene_7493.t2;Hsc_gene_7493.t4
|
Hsc_gene_7493.t1;Hsc_gene_7493.t2;Hsc_gene_7493.t3;Hsc_gene_7493.t4
|
— | — | — |
CDO62599
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
705-776
|
1.000
|
1-704
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
91155.360
|
9.018
|
20.500
|
29.381
|
14.562
|
49.356
|
50.644
|
16.366
|
13.015
|
39.175
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
267.709
|
30.390
|
45.970
|
193.061
|
43.060
|
9.243
|
7.287
|
6.630
|
450.639
|
707.383
|
597.350
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.531
|
2.183
|
-2.193
|
-2.205
|
— | — | — | — | — | — | — | — |