SCN Proteipedia

Hg_chrom6_TN10mRNA_11896

Organism: Heterodera glycines Gene Locus: chr6:4591110-4593547 Feature type: polypeptide

Protein Sequence

Length: 445

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.758	0.836	0.94	0.542	1.273	0.807	0.749	1.124	1.298	1.154	1.192	1.586	1.498	0.908	1.238	1.027	0.774	0.885	1.037	1.058	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11221	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.480

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KRVK	—	—	—	—	—	—	0.000	—	—	0.498	0.181	0.048	0.651	0.048	0.141	0.100	0.049	0.294	0.094

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010392	1.000	1.000	Hsc_gene_7491.t1	Hsc_gene_7491.t1	—	P21137.3 cAMP-dependent protein kinase catalytic subunit [Caenorhabditis elegans]	NP_001367022.1 cAMP-dependent protein kinase catalytic subunit [Caenorhabditis elegans];CAD45614.1 cAMP-dependent protein kinase catalytic subunit [Caenorhabditis elegans]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.959\|GO:0003674_0.897\|GO:0003824_0.897\|GO:0016740_0.897\|GO:0016772_0.888\|GO:0140096_0.886\|GO:0004672_0.881\|GO:0016301_0.881\|GO:0016773_0.881\|GO:0009987_0.879\|GO:0005575_0.809\|GO:0110165_0.809\|GO:0004674_0.794\|GO:0065007_0.778\|GO:0050789_0.766\|GO:0005622_0.765\|GO:0050794_0.715\|GO:0005488_0.687\|GO:0050896_0.634\|GO:0016020_0.617\|GO:0005737_0.606\|GO:0051716_0.590\|GO:0036094_0.588\|GO:0043167_0.588\|GO:0043168_0.571\|GO:0000166_0.567\|GO:0097159_0.567\|GO:1901265_0.567\|GO:1901363_0.567\|GO:0008152_0.563\|GO:0019538_0.563\|GO:0043170_0.563\|GO:0044238_0.563\|GO:0017076_0.556\|GO:0032553_0.548\|GO:0032555_0.548\|GO:0097367_0.548\|GO:0030554_0.545\|GO:0007154_0.544\|GO:0023052_0.543\|GO:0032502_0.541\|GO:0032559_0.539\|GO:0044237_0.536\|GO:0048519_0.532\|GO:0071840_0.522\|GO:0007165_0.521\|GO:0016043_0.517\|GO:0048856_0.512\|GO:0043226_0.511\|GO:0048523_0.504	IPR000719+101-355+\|IPR008271+220-232+\|IPR011009+99-384+\|IPR017441+107-130+\|IPR044109+100-415+	SM00220+101-355+	PF00069+101-355+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000005+185-376+cAMP-dependent_protein_kinase_catalytic_subunit_alpha\|G3DSA:3.30.200.20:FF:000005+98-190+cAMP-dependent_protein_kinase_catalytic_subunit	PTHR24353+58-420+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-81	1.000	82-445	4dg3_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.749	50733.200	8.521	10.000	28.989	12.584	47.640	52.360	16.180	12.809	45.618

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey60	543.998	260.351	347.075	404.852	634.104	534.101	278.349	1069.223	375.445	775.389	603.984

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.184	0.500	0.332	0.616	—	-0.932	0.891	-1.799	—	—	—	—	—

No JSON data available for plots.

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