Hg_chrom6_TN10mRNA_11898
Organism: Heterodera glycines Gene Locus: chr6:4593869-4600995 Feature type: polypeptideProtein Sequence
Length: 1,510
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.325 | 0.867 | 0.183 | 2.064 | 1.562 | 0.749 | 0.596 | 1.089 | 0.77 | 1.806 | 1.402 | 0.865 | 0.764 | 1.0 | 1.211 | 0.89 | 0.642 | 0.713 | 0.487 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11222
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
PKPS,RKRR,PEWKRGK,KKLRLHNKSEERGKKT,RKGCCFMPRVSFRRRSS,RQKRGKLKKVSPKKPNK,KKTKPKKKKGDGKSRKSKD
|
— | — | — | — |
1-24
|
0.991
|
0.932
|
0.000
|
0.000
|
0.207
|
0.103
|
0.013
|
0.735
|
0.060
|
0.111
|
0.142
|
0.041
|
0.496
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000596
|
2.000
|
5.000
|
Hsc_gene_7490.t1;Hsc_gene_7490.t2;Hsc_gene_7490.t3;Hsc_gene_7490.t4;Hsc_gene_7490.t5
|
— | — | — | — |
MBQ8052818
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
222-523;562-1031;1081-1510
|
3.000
|
1-221;524-561;1032-1080
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
171261.440
|
6.906
|
4.000
|
35.166
|
6.887
|
60.861
|
39.139
|
18.013
|
17.152
|
44.834
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
4103.257
|
60.578
|
1245.638
|
1027.618
|
229.090
|
38.137
|
43.739
|
31.609
|
19195.869
|
2551.194
|
9684.626
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.131
|
3.946
|
-0.169
|
-2.197
|
-2.572
|
— | — | — |
2.790
|
-4.054
|
-3.308
|
— | — |