Hg_chrom6_TN10mRNA_11901
Organism: Heterodera glycines Gene Locus: chr6:4606494-4608188 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.133 | 0.521 | 0.395 | 0.812 | 0.514 | 0.853 | 1.576 | 1.783 | 1.549 | 0.651 | 1.348 | 1.592 | 1.102 | 1.17 | 1.187 | 0.517 | 0.868 | 1.763 | 0.927 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11224
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.139
|
0.241
|
0.038
|
0.129
|
0.862
|
0.080
|
0.162
|
0.012
|
0.094
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010393
|
1.000
|
1.000
|
Hsc_gene_7488.t1
|
Hsc_gene_7488.t1
|
— |
Q3SYC2.2 2-acylglycerol O-acyltransferase 2 [Homo sapiens]
|
KAI3422565.1 Acyl-CoA wax alcohol acyltransferase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374
|
GO:0008150_0.856|GO:0003674_0.817|GO:0009987_0.794|GO:0003824_0.689|GO:0016740_0.641|GO:0008152_0.635|GO:0005575_0.628|GO:0110165_0.628|GO:0016746_0.625|GO:0016747_0.620|GO:0044238_0.620|GO:0044237_0.616|GO:0009058_0.615|GO:0008374_0.611|GO:0006629_0.570|GO:0008610_0.568|GO:0044255_0.563|GO:0016020_0.556|GO:0016411_0.536|GO:0071944_0.518|GO:0044249_0.516|GO:0005886_0.512
|
IPR007130+45-348+
|
— |
PF03982+45-348+Diacylglycerol_acyltransferase
|
— |
PTHR12317+15-347+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
39119.480
|
9.565
|
13.500
|
20.917
|
14.327
|
39.255
|
60.745
|
13.181
|
7.736
|
46.991
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
762.122
|
1486.559
|
844.837
|
779.770
|
1104.844
|
931.964
|
291.478
|
709.343
|
21.975
|
1012.005
|
587.706
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.044
|
-1.068
|
— |
0.471
|
-0.232
|
-1.669
|
-0.503
|
-1.142
|
-5.632
|
5.343
|
— | — | — |
No JSON data available for plots.