Hg_chrom6_TN10mRNA_11906
Organism: Heterodera glycines Gene Locus: chr6:4633921-4635434 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 1.2 | 0.289 | 1.368 | 0.397 | 2.137 | 0.803 | 2.976 | 0.794 | 0.59 | 0.18 | 1.867 | 1.433 | 2.137 | 0.729 | 1.531 | 0.846 | 0.962 | 0.611 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11229
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.803
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
39-60
|
0.872
|
— | — |
0.000
|
— | — |
0.242
|
0.138
|
0.086
|
0.265
|
0.107
|
0.570
|
0.367
|
0.006
|
0.774
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010394
|
1.000
|
1.000
|
Hsc_gene_7484.t1
|
Hsc_gene_7484.t1
|
— | — |
KAF7632770.1 LITAF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.837|GO:0110165_0.837|GO:0008150_0.821|GO:0009987_0.654|GO:0005622_0.589|GO:0050896_0.576|GO:0065007_0.545|GO:0050789_0.534|GO:0008152_0.527|GO:0016020_0.527|GO:0043170_0.527|GO:0050794_0.525|GO:0009058_0.502
|
IPR006629+168-251_182-249_183-251+|IPR037519+103-251+
|
SM00714+183-251+
|
PF10601+182-249+LITAF-like_zinc_ribbon_domain
|
— |
PTHR23292+103-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-158
|
1.000
|
159-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
27224.680
|
7.867
|
9.500
|
14.683
|
13.889
|
44.048
|
55.952
|
10.714
|
3.968
|
59.524
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1201.564
|
57.383
|
129.872
|
52.258
|
13.020
|
58.924
|
43.526
|
85.910
|
90.237
|
5023.829
|
2909.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
— |
-1.203
|
-2.036
|
2.192
|
— | — |
-0.839
|
-4.399
|
— |
-8.054
|
— | — |
No JSON data available for plots.