Hg_chrom6_TN10mRNA_11908
Organism: Heterodera glycines Gene Locus: chr6:4637704-4641760 Feature type: polypeptideProtein Sequence
Length: 858
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.26 | 1.084 | 0.848 | 0.402 | 0.913 | 1.255 | 1.013 | 2.04 | 0.777 | 1.26 | 0.724 | 1.988 | 0.712 | 1.009 | 1.308 | 1.099 | 0.822 | 0.865 | 0.717 | 0.343 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11231
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRHR,RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.200
|
0.172
|
0.013
|
0.656
|
0.114
|
0.349
|
0.219
|
0.069
|
0.459
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010395
|
1.000
|
1.000
|
Hsc_gene_7482.t1
|
Hsc_gene_7482.t1
|
— | — |
KAI1729729.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+22-111_48-77_48-80_81-110_81-113_114-143_248-315_251-280_251-283_287-316_287-319+|IPR036770+6-196_20-318_211-346+|IPR051165+6-335+
|
SM00248+48-77_81-110_114-143_251-280_287-316+
|
PF12796+22-111_248-315+Ankyrin_repeats_(3_copies)
|
— |
PTHR24123+6-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;544-788
|
2.000
|
9-543;789-858
|
2xeh_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
93021.420
|
8.888
|
26.500
|
25.408
|
8.741
|
47.669
|
52.331
|
15.268
|
10.140
|
53.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
480.005
|
1250.493
|
800.464
|
377.224
|
564.125
|
886.509
|
476.795
|
515.047
|
88.341
|
207.272
|
156.301
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.873
|
-1.866
|
-0.977
|
0.548
|
0.667
|
-0.886
|
-0.890
|
— | — | — | — | — | — |
No JSON data available for plots.