Hg_chrom6_TN10mRNA_11909
Organism: Heterodera glycines Gene Locus: chr6:4642915-4645420 Feature type: polypeptideProtein Sequence
Length: 256
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.272 | 0.636 | 0.994 | 0.673 | 1.432 | 0.3 | 1.349 | 0.977 | 1.562 | 1.161 | 0.769 | 1.838 | 1.085 | 0.526 | 1.594 | 0.781 | 0.704 | 1.065 | 0.3 | 0.115 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11232
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.730
|
0.394
|
0.060
|
0.688
|
0.137
|
0.089
|
0.150
|
0.241
|
0.082
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010396
|
1.000
|
1.000
|
Hsc_gene_7481.t1
|
Hsc_gene_7481.t1
|
— |
A6UF02.1 PF03932 family protein CutC [Sinorhizobium medicae WSM419]
|
WP_183430392.1 copper homeostasis protein CutC [Mesorhizobium sp. RMAD-H1];MBB2971021.1 copper homeostasis protein [Mesorhizobium sp. RMAD-H1]
|
WP_245512876
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0005575_0.862|GO:0110165_0.855|GO:0005622_0.760|GO:0005737_0.742|GO:0043226_0.704|GO:0043229_0.702|GO:0005829_0.626|GO:0043228_0.592|GO:0043232_0.592|GO:0003674_0.564|GO:0009987_0.514
|
IPR005627+5-253_6-212_6-215+|IPR036822+5-255_6-222+
|
— |
PF03932+6-212+CutC_family
|
— |
PTHR12598+5-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
220-256
|
1.000
|
1-219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
27481.570
|
6.350
|
-0.500
|
28.906
|
6.641
|
42.578
|
57.422
|
14.844
|
14.062
|
51.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
318.159
|
508.556
|
446.498
|
284.983
|
267.356
|
236.671
|
379.580
|
367.606
|
193.329
|
312.728
|
261.557
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.419
|
-0.973
|
-0.538
|
— | — |
0.691
|
0.528
|
— | — | — | — | — | — |
No JSON data available for plots.