Hg_chrom6_TN10mRNA_11912
Organism: Heterodera glycines Gene Locus: chr6:4652818-4655176 Feature type: polypeptideProtein Sequence
Length: 336
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.623 | 1.038 | 1.028 | 1.437 | 1.736 | 0.916 | 0.744 | 1.637 | 0.992 | 1.086 | 1.172 | 1.751 | 1.157 | 0.687 | 1.154 | 0.978 | 0.927 | 0.947 | 0.687 | 0.175 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRRK,RRKRR
|
— | — | — | — |
1-25
|
0.984
|
1.000
|
0.000
|
0.000
|
0.466
|
0.385
|
0.056
|
0.280
|
0.224
|
0.057
|
0.104
|
0.008
|
0.303
|
0.379
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010399
|
1.000
|
1.000
|
Hsc_gene_7477.t1
|
Hsc_gene_7477.t1
|
— | — |
KAF7635872.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
KAJ9527572
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
— |
IPR000719+70-336+|IPR011009+64-307+
|
— | — | — |
PTHR24346+37-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
208-277;321-336
|
2.000
|
1-207;278-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
37884.020
|
5.979
|
-3.500
|
32.738
|
8.929
|
53.274
|
46.726
|
16.667
|
16.071
|
48.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
616.993
|
70.915
|
1492.523
|
796.973
|
471.705
|
134.177
|
215.773
|
1842.899
|
443.704
|
482.204
|
465.704
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.168
|
3.352
|
-0.799
|
-0.788
|
-1.799
|
0.695
|
3.680
|
-2.956
|
— | — | — | — | — |