SCN Proteipedia

Hg_chrom6_TN10mRNA_11915

Organism: Heterodera glycines Gene Locus: chr6:4659340-4666367 Feature type: polypeptide

Protein Sequence

Length: 903

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.236	1.622	0.524	0.344	1.717	2.414	0.91	2.658	0.615	0.718	0.671	1.759	0.677	1.15	1.04	1.25	0.744	0.336	0.341	0.261	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11238	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRR,KRPMNAFMVWARDERRKIL	—	—	—	—	—	—	0.000	—	—	0.934	0.122	0.009	0.272	0.028	0.029	0.022	0.013	0.038	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004363	2.000	1.000	Hsc_gene_7474.t1	—	—	Q23045.2 Transcription factor egl-13 [Caenorhabditis elegans]	KHN70829.1 Transcription factor SOX-6 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	—	GO:0008150_0.913\|GO:0032502_0.797\|GO:0048856_0.786\|GO:0009987_0.771\|GO:0003674_0.724\|GO:0005488_0.724\|GO:0032501_0.713\|GO:0007275_0.690\|GO:0005575_0.688\|GO:0065007_0.685\|GO:0050789_0.675\|GO:0050794_0.664\|GO:0097159_0.657\|GO:0003676_0.652\|GO:0110165_0.651\|GO:0005622_0.629\|GO:0048731_0.607\|GO:0007399_0.590\|GO:0003677_0.581\|GO:0008152_0.581\|GO:0019222_0.581\|GO:0043226_0.577\|GO:0031323_0.570\|GO:0044237_0.570\|GO:0043229_0.569\|GO:0044238_0.565\|GO:0080090_0.565\|GO:0043565_0.562\|GO:0043170_0.561\|GO:0060255_0.561\|GO:0048869_0.554\|GO:0030154_0.553\|GO:0009058_0.550\|GO:0009889_0.550\|GO:0006139_0.548\|GO:0009059_0.548\|GO:0016070_0.548\|GO:0032774_0.548\|GO:0034654_0.548\|GO:0044249_0.548\|GO:0090304_0.548\|GO:0141187_0.548\|GO:0031326_0.546\|GO:0010467_0.542\|GO:0010468_0.542\|GO:0010556_0.542\|GO:0019219_0.540\|GO:0051252_0.540\|GO:0006351_0.527\|GO:0006355_0.527\|GO:2001141_0.527\|GO:0016020_0.519	IPR009071+636-706_637-705+\|IPR036910+629-709_632-712+\|IPR051356+174-818+	SM00398+636-706+	PF00505+637-705+HMG_(high_mobility_group)_box	G3DSA:1.10.30.10:FF:000003+633-713+Putative_transcription_factor_SOX-6	PTHR45789+174-818+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-903	0.000	—	1i11_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.700	99022.890	6.190	-9.000	28.018	9.081	57.697	42.303	14.839	13.178	50.609

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1594.199	5443.113	1337.502	823.125	809.847	1169.488	1045.287	1672.488	1101.729	1535.504	1349.600

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.253	-2.862	-0.593	—	0.546	—	—	-0.533	—	—	—	—	—

No JSON data available for plots.

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