Hg_chrom6_TN10mRNA_11921
Organism: Heterodera glycines Gene Locus: chr6:4700964-4705786 Feature type: polypeptideProtein Sequence
Length: 384
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.03 | 0.71 | 0.718 | 0.694 | 1.269 | 0.558 | 1.562 | 1.447 | 1.548 | 0.592 | 2.298 | 1.953 | 0.451 | 0.957 | 0.781 | 0.768 | 1.342 | 2.003 | 1.608 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11243
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.625
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.028
|
0.103
|
0.006
|
0.101
|
0.410
|
0.361
|
0.284
|
0.010
|
0.608
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010404
|
1.000
|
1.000
|
Hsc_gene_7465.t1
|
Hsc_gene_7465.t1
|
— |
O01393.1 Innexin unc-9 [Caenorhabditis elegans]
|
KHN83523.1 Innexin unc-9 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.866|GO:0110165_0.866|GO:0008150_0.845|GO:0009987_0.723|GO:0003674_0.611|GO:0051179_0.589|GO:0006810_0.588|GO:0051234_0.588|GO:0030054_0.578|GO:0016020_0.531|GO:0005911_0.520|GO:0070161_0.520|GO:0055085_0.505|GO:0005886_0.504|GO:0005921_0.504|GO:0071944_0.504
|
IPR000990+1-378_14-378_19-372_42-53_70-79_99-121_196-210_244-253_268-284+
|
— |
PF00876+19-372+Innexin
|
— |
PTHR11893+1-378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-384
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
44911.470
|
7.898
|
8.000
|
19.792
|
18.229
|
39.323
|
60.677
|
11.719
|
8.073
|
42.188
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
274.498
|
353.780
|
719.463
|
255.038
|
74.668
|
193.308
|
249.028
|
391.417
|
57.077
|
319.360
|
206.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
-0.609
|
-1.387
|
-1.802
|
1.386
|
0.373
|
0.919
|
-0.514
|
— | — | — | — | — |
No JSON data available for plots.