Hg_chrom6_TN10mRNA_11922
Organism: Heterodera glycines Gene Locus: chr6:4709254-4712809 Feature type: polypeptideProtein Sequence
Length: 586
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 1.429 | 1.055 | 0.471 | 1.081 | 1.269 | 0.874 | 1.706 | 1.289 | 0.969 | 0.724 | 1.305 | 1.09 | 0.853 | 0.94 | 0.975 | 1.007 | 1.138 | 1.313 | 0.703 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11244
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KKDGKVIGDEENGRRKFS
|
— | — | — | — |
1-22
|
0.964
|
1.000
|
1.000
|
1.000
|
0.204
|
0.022
|
0.014
|
0.276
|
0.279
|
0.459
|
0.343
|
0.056
|
0.710
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010405
|
1.000
|
1.000
|
Hsc_gene_7464.t1
|
Hsc_gene_7464.t1
|
— | — |
CAK5073706.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.910|GO:0110165_0.910|GO:0016020_0.826|GO:0071944_0.812|GO:0005886_0.791|GO:0030054_0.613|GO:0098590_0.591|GO:0042995_0.585|GO:0120025_0.583|GO:0045202_0.576|GO:0043005_0.567|GO:0030424_0.554
|
IPR003961+345-498_449-502+|IPR007110+31-120+|IPR013151+261-334+|IPR013783+247-339_340-510+|IPR036116+343-504+|IPR036179+257-353+|IPR051170+138-535+
|
SM00060+345-498+
|
PF00047+261-334+Immunoglobulin_domain
|
— |
PTHR12231+138-535+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
395-469;577-586
|
2.000
|
1-394;470-576
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
65249.330
|
5.887
|
-7.000
|
25.085
|
11.433
|
49.147
|
50.853
|
12.799
|
12.287
|
52.560
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1200.717
|
728.382
|
1212.305
|
1125.512
|
2569.716
|
1125.447
|
2944.086
|
616.239
|
137.666
|
1279.254
|
790.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
0.491
|
— |
1.160
|
-1.177
|
1.399
|
-0.972
|
2.399
|
-3.316
|
3.214
|
— | — | — |