Hg_chrom6_TN10mRNA_11925
Organism: Heterodera glycines Gene Locus: chr6:4728505-4730668 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 0.717 | 1.122 | 0.621 | 1.114 | 0.791 | 0.765 | 1.671 | 0.8 | 1.633 | 0.584 | 0.756 | 1.714 | 0.89 | 1.312 | 1.359 | 0.421 | 1.246 | 0.395 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11247
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.594
|
0.112
|
0.427
|
0.084
|
0.079
|
0.059
|
0.108
|
0.218
|
0.215
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002315
|
2.000
|
2.000
|
Hsc_gene_7460.t1;Hsc_gene_7460.t2
|
Hsc_gene_7460.t1;Hsc_gene_7460.t2
|
— | — |
KAI6235760.1 Acetyltransf-18 domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
43254.200
|
6.049
|
-3.500
|
26.478
|
12.596
|
44.730
|
55.270
|
13.625
|
12.853
|
50.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
480.099
|
373.435
|
367.154
|
293.410
|
766.476
|
2045.853
|
357.332
|
224.703
|
16.585
|
427.360
|
251.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.256
|
-0.485
|
-0.213
|
1.352
|
1.433
|
-2.509
|
-3.299
|
0.813
|
-4.808
|
— | — | — | — |
No JSON data available for plots.