Hg_chrom6_TN10mRNA_11927
Organism: Heterodera glycines Gene Locus: chr6:4752489-4754522 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 1.163 | 0.795 | 0.431 | 0.833 | 1.763 | 0.446 | 1.25 | 1.528 | 1.52 | 0.758 | 2.206 | 2.257 | 0.361 | 2.296 | 0.982 | 0.717 | 0.663 | 1.923 | 0.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11249
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.420
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
10-34
|
0.988
|
— | — | — | — |
0.008
|
— | — |
0.490
|
0.154
|
0.025
|
0.357
|
0.095
|
0.081
|
0.040
|
0.003
|
0.077
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002316
|
3.000
|
1.000
|
Hsc_gene_9731.t1
|
— | — | — |
NP_001407530.1 Proteasome activator PA28 C-terminal domain-containing protein [Caenorhabditis elegans];CAH2663879.1 Proteasome activator PA28 C-terminal domain-containing protein [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008537
|
GO:0005575_0.734|GO:0008150_0.724|GO:0110165_0.722|GO:0005622_0.679|GO:0016020_0.667|GO:0043226_0.644|GO:0005737_0.620|GO:0043227_0.611|GO:0032991_0.502
|
IPR003186+117-159+|IPR036252+118-158+|IPR036997+77-159+
|
— |
PF02252+117-159+Proteasome_activator_PA28,_C-terminal
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
7yqd_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
19243.370
|
11.128
|
13.000
|
28.125
|
14.375
|
51.250
|
48.750
|
18.750
|
9.375
|
35.625
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
293.987
|
66.561
|
173.833
|
171.965
|
136.462
|
140.433
|
30.549
|
90.547
|
1010.846
|
224.179
|
561.322
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.154
|
1.231
|
— |
-0.366
|
— |
-2.197
|
-0.742
|
-1.431
|
— | — | — | — | — |
No JSON data available for plots.