Hg_chrom6_TN10mRNA_11930
Organism: Heterodera glycines Gene Locus: chr6:4773273-4774081 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 2.18 | 1.023 | 0.647 | 0.729 | 0.16 | 0.521 | 1.25 | 2.222 | 0.591 | 0.758 | 1.103 | 1.563 | 1.442 | 1.276 | 0.536 | 1.639 | 0.947 | 0.962 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11252
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRIGYAFKTTKPKRI
|
— | — |
7-87
|
0.870
|
— | — |
0.002
|
— | — |
0.394
|
0.278
|
0.034
|
0.566
|
0.072
|
0.078
|
0.116
|
0.015
|
0.257
|
0.540
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002318
|
1.000
|
3.000
|
Hsc_gene_12374.t1;Hsc_gene_12416.t1;Hsc_gene_8293.t1
|
Hsc_gene_12374.t1
|
— |
P53021.2 Major sperm protein 1 [Globodera rostochiensis]
|
ARR95834.1 major sperm protein [Heterodera cruciferae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.552|GO:0003674_0.542
|
IPR000535+42-159_43-144+|IPR008962+39-159+|IPR013783+36-160+|IPR051155+36-159+
|
— |
PF00635+43-144+MSP_(Major_sperm_protein)_domain
|
— |
PTHR22920+36-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
3msp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
18066.630
|
8.278
|
4.000
|
23.750
|
11.875
|
47.500
|
52.500
|
13.750
|
10.000
|
55.625
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1516.940
|
64.357
|
16.943
|
39.241
|
125.912
|
4180.000
|
49.005
|
7888.950
|
2.056
|
1998.418
|
1142.834
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.155
|
-0.851
|
1.320
|
1.651
|
5.066
|
-6.404
|
0.806
|
-7.184
|
-9.984
|
4.354
|
— | — | — |
No JSON data available for plots.