Hg_chrom6_TN10mRNA_11933
Organism: Heterodera glycines Gene Locus: chr6:4782773-4784717 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 1.029 | 0.805 | 0.712 | 1.229 | 0.983 | 1.124 | 1.77 | 1.245 | 1.076 | 0.492 | 0.694 | 0.983 | 0.567 | 1.625 | 0.801 | 0.919 | 1.162 | 2.269 | 0.954 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11254
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.764
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.359
|
0.345
|
0.036
|
0.555
|
0.103
|
0.142
|
0.115
|
0.061
|
0.115
|
0.286
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010409
|
1.000
|
1.000
|
Hsc_gene_7454.t1
|
Hsc_gene_7454.t1
|
— |
A8WXM1.1 D-aspartate oxidase 2 [Caenorhabditis briggsae]
|
KAI1732150.1 FAD dependent oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003884|GO:0046416|GO:0071949
|
GO:0003674_0.756|GO:0008150_0.750|GO:0003824_0.682|GO:0009987_0.641|GO:0008152_0.579|GO:0005575_0.566|GO:0016491_0.565|GO:0110165_0.560|GO:0044237_0.545|GO:0044238_0.542|GO:0003884_0.530|GO:0008131_0.530|GO:0016638_0.530|GO:0016641_0.530
|
IPR006076+3-330+|IPR006181+307-325+|IPR023209+1-336+
|
— |
PF01266+3-330+FAD_dependent_oxidoreductase
|
— |
PTHR11530+1-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
38224.150
|
7.078
|
4.000
|
26.549
|
13.274
|
46.018
|
53.982
|
14.749
|
11.799
|
49.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1973.276
|
340.068
|
1888.777
|
2493.347
|
2412.706
|
2593.472
|
2730.624
|
1784.695
|
1882.398
|
1879.901
|
1880.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.245
|
2.737
|
0.509
|
— | — | — |
-0.647
|
0.758
|
— | — | — | — | — |
No JSON data available for plots.