Hg_chrom6_TN10mRNA_11936
Organism: Heterodera glycines Gene Locus: chr6:4789146-4791692 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.1 | 0.691 | 0.541 | 0.839 | 0.45 | 0.832 | 0.579 | 1.622 | 1.381 | 2.045 | 0.287 | 0.795 | 2.027 | 0.52 | 1.158 | 1.506 | 0.798 | 1.392 | 1.871 | 0.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11257
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
91-119
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.076
|
0.090
|
0.065
|
0.080
|
0.872
|
0.383
|
0.399
|
0.018
|
0.218
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010411
|
1.000
|
1.000
|
Hsc_gene_7451.t1
|
Hsc_gene_7451.t1
|
— |
F4J4C8.1 Dolichol kinase EVAN [Arabidopsis thaliana]
|
KAI1724600.1 dolichol kinase [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.922|GO:0110165_0.922|GO:0016020_0.880|GO:0071944_0.880|GO:0005886_0.874|GO:0008150_0.803|GO:0005622_0.768|GO:0005737_0.768|GO:0009987_0.754|GO:0005773_0.749|GO:0043226_0.749|GO:0043227_0.749|GO:0043229_0.749|GO:0043231_0.749|GO:0012505_0.725|GO:0005783_0.620|GO:0008152_0.591|GO:0044237_0.577|GO:0044238_0.576|GO:0009058_0.575|GO:0003674_0.524
|
IPR032974+286-358+
|
— | — | — |
PTHR13205+286-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
40926.030
|
8.780
|
13.000
|
16.486
|
13.784
|
38.108
|
61.892
|
10.811
|
5.676
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
534.873
|
968.115
|
758.082
|
525.837
|
595.329
|
614.700
|
793.793
|
574.050
|
232.871
|
354.202
|
302.203
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.583
|
-1.018
|
-0.419
|
0.147
|
— |
0.378
|
— |
0.609
|
— | — | — | — | — |
No JSON data available for plots.