Hg_chrom6_TN10mRNA_11937
Organism: Heterodera glycines Gene Locus: chr6:4792598-4797325 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 0.962 | 1.014 | 0.372 | 0.989 | 0.968 | 0.749 | 0.899 | 1.639 | 1.458 | 0.899 | 1.375 | 1.499 | 0.899 | 1.615 | 0.874 | 1.061 | 1.008 | 0.277 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11258
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RRVPMMVLKSNIQRDKVR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.563
|
0.256
|
0.023
|
0.575
|
0.073
|
0.037
|
0.048
|
0.010
|
0.061
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010412
|
1.000
|
1.000
|
Hsc_gene_7450.t1
|
Hsc_gene_7450.t1
|
— |
Q3MSQ8.1 Probable ATP-dependent RNA helicase DDX4 [Pelophylax lessonae]
|
KAI1726613.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005524
|
GO:0005575_0.848|GO:0110165_0.840|GO:0005622_0.772|GO:0008150_0.723|GO:0005737_0.678|GO:0043226_0.652|GO:0003674_0.636|GO:0043229_0.631|GO:0009987_0.613|GO:0016020_0.521
|
IPR000629+290-298+|IPR001650+373-556_421-514_431-514+|IPR011545+152-343+|IPR014001+146-377_160-360+|IPR027417+110-363_214-532_364-553+
|
SM00487+146-377+|SM00490+431-514+
|
PF00270+152-343+DEAD/DEAH_box_helicase|PF00271+421-514+Helicase_conserved_C-terminal_domain
|
— |
PTHR47958+122-530+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80
|
1.000
|
81-556
|
5nt7_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
62433.290
|
9.910
|
18.000
|
27.158
|
8.633
|
47.662
|
52.338
|
15.647
|
11.511
|
47.302
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1175.944
|
1587.431
|
1158.950
|
1399.400
|
1368.384
|
1221.298
|
1694.313
|
1066.280
|
1042.008
|
802.226
|
904.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.684
|
-0.319
|
0.381
|
— |
-0.149
|
0.483
|
-0.300
|
0.811
|
— | — | — | — | — |
No JSON data available for plots.