SCN Proteipedia

Hg_chrom6_TN10mRNA_11938

Organism: Heterodera glycines Gene Locus: chr6:4798386-4801882 Feature type: polypeptide

Protein Sequence

Length: 760

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.887	0.796	1.124	0.998	1.535	1.113	0.376	1.118	1.55	1.583	0.937	1.471	1.352	0.531	1.101	0.902	1.014	0.797	0.81	0.503	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11259	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.399	0.107	0.008	0.592	0.175	0.270	0.380	0.045	0.208	0.185

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004367	2.000	1.000	Hsc_gene_7449.t1	Hsc_gene_7449.t1	—	Q19642.1 Centromere/kinetochore protein zw10 homolog [Caenorhabditis elegans]	KAH7714192.1 Centromere/kinetochore Zw10 family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.950\|GO:0005575_0.911\|GO:0110165_0.911\|GO:0009987_0.903\|GO:0003674_0.855\|GO:0005622_0.847\|GO:0065007_0.820\|GO:0016020_0.810\|GO:0050789_0.802\|GO:0005737_0.796\|GO:0050794_0.785\|GO:0050896_0.785\|GO:0005488_0.772\|GO:0043226_0.766\|GO:0051716_0.764\|GO:0071944_0.764\|GO:0071840_0.761\|GO:0016043_0.759\|GO:0005886_0.755\|GO:0043229_0.749\|GO:0007154_0.730\|GO:0043227_0.730\|GO:0023052_0.728\|GO:0048519_0.726\|GO:0006996_0.719\|GO:0007165_0.715\|GO:0048523_0.713\|GO:0043231_0.695\|GO:0051128_0.693\|GO:0022414_0.692\|GO:0035556_0.690\|GO:0019953_0.687\|GO:0007049_0.685\|GO:0022402_0.685\|GO:0000280_0.684\|GO:0048285_0.684\|GO:0000278_0.679\|GO:0033043_0.679\|GO:0051726_0.679\|GO:0140014_0.679\|GO:1903047_0.679\|GO:0051321_0.678\|GO:0140013_0.678\|GO:1903046_0.678\|GO:0010564_0.677\|GO:0051129_0.677\|GO:0051276_0.676\|GO:0007059_0.675\|GO:0010256_0.675\|GO:0010639_0.675\|GO:0007346_0.674\|GO:0098813_0.674\|GO:0000070_0.670\|GO:0000075_0.670\|GO:0000819_0.670\|GO:0007030_0.670\|GO:0007088_0.670\|GO:0007091_0.670\|GO:0007093_0.670\|GO:0007094_0.670\|GO:0010948_0.670\|GO:0010965_0.670\|GO:0030071_0.670\|GO:0031577_0.670\|GO:0033044_0.670\|GO:0033045_0.670\|GO:0033046_0.670\|GO:0033047_0.670\|GO:0033048_0.670\|GO:0044770_0.670\|GO:0044772_0.670\|GO:0044784_0.670\|GO:0045786_0.670\|GO:0045839_0.670\|GO:0045841_0.670\|GO:0045930_0.670\|GO:0051304_0.670\|GO:0051306_0.670\|GO:0051783_0.670\|GO:0051784_0.670\|GO:0051983_0.670\|GO:0051985_0.670\|GO:0071173_0.670\|GO:0071174_0.670\|GO:1901987_0.670\|GO:1901988_0.670\|GO:1901990_0.670\|GO:1901991_0.670\|GO:1902099_0.670\|GO:1902100_0.670\|GO:1905818_0.670\|GO:1905819_0.670\|GO:2000816_0.670\|GO:2001251_0.670\|GO:0032991_0.658\|GO:0005773_0.635\|GO:0012505_0.625\|GO:0043228_0.610\|GO:0043232_0.610\|GO:0005856_0.589\|GO:0099080_0.578\|GO:0099081_0.568\|GO:0099512_0.568\|GO:0015630_0.567\|GO:0099513_0.565\|GO:0005874_0.556\|GO:0005694_0.548\|GO:0000775_0.540\|GO:0000776_0.540\|GO:0000779_0.540\|GO:0000793_0.540\|GO:0005819_0.540\|GO:0005828_0.540\|GO:0005876_0.540\|GO:0098687_0.540\|GO:1990423_0.540\|GO:0051179_0.467\|GO:0006810_0.456\|GO:0051234_0.456\|GO:0051641_0.420\|GO:0005515_0.407\|GO:0051649_0.400\|GO:0008104_0.391\|GO:0016192_0.391\|GO:0033036_0.391\|GO:0070727_0.391\|GO:0044085_0.390\|GO:0046907_0.389\|GO:0022607_0.383\|GO:0007010_0.379\|GO:0007017_0.378\|GO:0097159_0.376\|GO:0048193_0.374\|GO:0051640_0.374\|GO:0051656_0.374\|GO:0043933_0.373\|GO:0000226_0.372\|GO:0033365_0.372\|GO:0065003_0.372\|GO:0005829_0.369\|GO:0007163_0.366\|GO:0003676_0.362\|GO:0000132_0.361\|GO:0006888_0.361\|GO:0007080_0.361\|GO:0007096_0.361\|GO:0010458_0.361\|GO:0030010_0.361\|GO:0034501_0.361\|GO:0034502_0.361\|GO:0040001_0.361\|GO:0050000_0.361\|GO:0051293_0.361\|GO:0051294_0.361\|GO:0051303_0.361\|GO:0051310_0.361\|GO:0051653_0.361\|GO:0071459_0.361\|GO:1902850_0.361\|GO:1903083_0.361\|GO:0003677_0.354	IPR046362+566-760+\|IPR048343+457-589+\|IPR048344+204-400+	—	PF20665+204-400+Centromere/kinetochore_protein_zw10,_middle_domain\|PF20666+457-589+Centromere/kinetochore_protein_zw10,_C-terminal\|PF22766+612-759+ZW10_C-terminal_helical_domain	—	PTHR12205+4-759+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-760	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.787	86734.680	4.953	-20.500	29.211	9.868	49.474	50.526	13.816	15.395	43.816

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	grey	296.001	187.958	153.962	204.129	199.917	240.447	722.333	561.343	106.445	363.889	253.556

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.517	—	0.515	—	—	1.598	1.117	0.508	—	—	—	—	—

No JSON data available for plots.

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