Hg_chrom6_TN10mRNA_11941
Organism: Heterodera glycines Gene Locus: chr6:4818597-4819799 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 1.42 | 0.899 | 0.702 | 0.969 | 1.193 | 1.73 | 0.872 | 0.904 | 0.471 | 0.484 | 0.684 | 1.292 | 0.391 | 2.848 | 1.412 | 0.667 | 0.749 | 1.118 | 0.427 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11262
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRELRRDSVGNSYRNDRR,RGRGGGRGRSANGGRGRRGNGAGRGW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.647
|
0.242
|
0.017
|
0.627
|
0.057
|
0.015
|
0.027
|
0.034
|
0.071
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004366
|
2.000
|
1.000
|
Hsc_gene_7453.t1
|
Hsc_gene_7447.t1
|
— | — | — |
KAH0825828
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;121-344
|
1.000
|
40-120
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
38038.890
|
11.129
|
25.000
|
29.651
|
9.302
|
54.360
|
45.640
|
18.895
|
10.756
|
54.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
107.866
|
17.096
|
33.177
|
52.904
|
175.667
|
304.857
|
132.207
|
132.715
|
5.529
|
149.534
|
87.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
1.492
|
0.780
|
1.702
|
0.809
|
-1.196
|
-1.314
|
— |
-4.896
|
— | — | — | — |
No JSON data available for plots.