Hg_chrom6_TN10mRNA_11946
Organism: Heterodera glycines Gene Locus: chr6:4848594-4849892 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.174 | 0.543 | 0.257 | 2.488 | 0.765 | 0.533 | 0.746 | 1.658 | 0.908 | 1.357 | 0.439 | 0.622 | 0.861 | 1.371 | 1.173 | 0.489 | 1.47 | 1.148 | 1.097 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11267
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.173
|
0.889
|
0.066
|
0.261
|
0.009
|
0.081
|
0.021
|
0.102
|
0.033
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004369
|
1.000
|
2.000
|
Hsc_gene_7441.t1;Hsc_gene_7441.t2
|
Hsc_gene_7441.t1;Hsc_gene_7441.t2
|
— |
Q66KY3.2 Protein CutA homolog [Xenopus laevis]
|
KAI6244114.1 putativeprotein [Aphelenchoides fujianensis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010038
|
GO:0008150_0.746|GO:0005575_0.703|GO:0110165_0.620|GO:0009987_0.614|GO:0043226_0.559|GO:0016020_0.554|GO:0003674_0.536|GO:0005488_0.516
|
IPR004323+10-115_14-110+|IPR011322+10-113+|IPR015867+9-123+
|
— |
PF03091+14-110+CutA1_divalent_ion_tolerance_protein
|
— |
PTHR23419+10-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
113-134
|
1.000
|
1-112
|
1xk8_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
15277.440
|
5.377
|
-2.000
|
35.075
|
8.955
|
50.000
|
50.000
|
17.164
|
17.910
|
42.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
741.763
|
587.771
|
509.822
|
399.124
|
500.699
|
409.280
|
630.589
|
394.481
|
848.289
|
1322.086
|
1119.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.437
|
-0.696
|
-0.243
|
0.295
|
-0.276
|
0.635
|
— |
0.820
|
— | — | — | — | — |
No JSON data available for plots.