Hg_chrom6_TN10mRNA_11947
Organism: Heterodera glycines Gene Locus: chr6:4850157-4854616 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.925 | 1.25 | 1.251 | 0.371 | 1.362 | 1.489 | 0.947 | 0.968 | 0.908 | 0.959 | 0.945 | 2.277 | 1.016 | 0.951 | 0.966 | 0.492 | 1.093 | 1.271 | 0.331 | 0.38 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11268
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.165
|
0.073
|
0.018
|
0.665
|
0.384
|
0.782
|
0.549
|
0.027
|
0.317
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010417
|
1.000
|
1.000
|
Hsc_gene_7440.t1
|
Hsc_gene_7440.t1;Hsc_gene_7440.t2
|
— |
Q6ZVM7.1 TOM1-like protein 2 [Homo sapiens]
|
KAH7732283.1 Protein C07A12.7 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035091|GO:0043130
|
GO:0005575_0.824|GO:0110165_0.815|GO:0008150_0.801|GO:0003674_0.739|GO:0009987_0.737|GO:0005622_0.699|GO:0005488_0.659|GO:0005737_0.645|GO:0016020_0.633|GO:0043226_0.608|GO:0005515_0.594|GO:0043227_0.549|GO:0043229_0.529|GO:0065007_0.522|GO:0050789_0.504
|
IPR002014+55-196_59-196_67-200+|IPR004152+258-351_273-351+|IPR008942+43-200_50-200+|IPR014645+45-457+|IPR038425+253-358+
|
SM00288+59-196+
|
PF00790+55-196+VHS_domain|PF03127+273-351+GAT_domain
|
— |
PTHR13856+48-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42;359-465
|
1.000
|
43-358
|
1elk_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
51289.940
|
4.789
|
-14.500
|
27.957
|
7.312
|
49.247
|
50.753
|
12.903
|
15.054
|
52.688
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1662.448
|
1296.495
|
2102.564
|
1570.425
|
1528.432
|
2160.030
|
4025.385
|
2183.567
|
1601.920
|
496.681
|
970.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.469
|
0.139
|
-0.313
|
— |
0.514
|
0.910
|
— |
1.026
|
— | — | — | — | — |
No JSON data available for plots.