Hg_chrom6_TN10mRNA_11948
Organism: Heterodera glycines Gene Locus: chr6:4855331-4856785 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 0.595 | 0.93 | 0.0 | 3.282 | 1.705 | 0.792 | 0.767 | 0.625 | 0.449 | 1.705 | 1.655 | 0.497 | 0.393 | 2.453 | 0.329 | 0.839 | 0.504 | 0.197 | 0.527 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRQEGEKEKKTNGKRQRR,KRQEGEKEKKTNGKRQRRQ,EERHRRRRERTEEKEERETGRTTDDGRKRARKGD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.776
|
0.064
|
0.015
|
0.242
|
0.025
|
0.026
|
0.081
|
0.005
|
0.026
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010418
|
1.000
|
1.000
|
Hsc_gene_7439.t1
|
Hsc_gene_7439.t1
|
— |
Q09252.1 Nuclear speckle splicing regulatory protein 1 homolog [Caenorhabditis elegans]
|
KAI1726027.1 coiled-coil domain-containing protein 55 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000381
|
GO:0008150_0.927|GO:0005575_0.802|GO:0110165_0.798|GO:0005622_0.778|GO:0032502_0.758|GO:0043226_0.732|GO:0043229_0.718|GO:0016020_0.716|GO:0009987_0.713|GO:0043227_0.628|GO:0005634_0.617|GO:0043231_0.617|GO:0032501_0.575|GO:0048856_0.572|GO:0007275_0.555
|
IPR018612+63-179+|IPR042816+2-378+
|
— |
PF09745+63-179+Nuclear_speckle_splicing_regulatory_protein_1,_N-terminal
|
— |
PTHR31938+2-378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-391
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
45897.630
|
5.932
|
-3.000
|
49.616
|
5.371
|
66.240
|
33.760
|
24.808
|
24.808
|
36.061
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
1867.367
|
2663.094
|
1505.708
|
1304.388
|
1359.880
|
1326.042
|
1292.062
|
1552.120
|
1472.168
|
2939.370
|
2310.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.054
|
-1.167
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.