Hg_chrom6_TN10mRNA_11950
Organism: Heterodera glycines Gene Locus: chr6:4861270-4863929 Feature type: polypeptideProtein Sequence
Length: 483
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.794 | 1.011 | 0.828 | 0.928 | 1.001 | 1.062 | 1.084 | 0.621 | 0.782 | 1.147 | 0.565 | 1.583 | 1.265 | 1.035 | 1.732 | 1.065 | 0.984 | 1.098 | 1.433 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11271
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKTCQRVYPSPSRRRMD
|
— | — |
9-49
|
0.973
|
— | — |
0.000
|
— | — |
0.244
|
0.288
|
0.099
|
0.537
|
0.171
|
0.337
|
0.277
|
0.246
|
0.346
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010420
|
1.000
|
1.000
|
Hsc_gene_7437.t1
|
Hsc_gene_7437.t1
|
— |
Q3UE31.2 Uncharacterized protein KIAA0930 homolog [Mus musculus]
|
KAI6177378.1 Protein of unknown function DUF2045 family-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019141+49-466_65-301+
|
— |
PF09741+65-301+Uncharacterized_conserved_protein_(DUF2045)
|
— |
PTHR21477+49-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;347-413
|
2.000
|
2-346;414-483
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
53532.960
|
8.543
|
11.000
|
24.017
|
9.317
|
45.963
|
54.037
|
13.458
|
10.559
|
53.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
509.224
|
1545.547
|
867.799
|
509.386
|
454.477
|
460.351
|
706.867
|
500.820
|
194.647
|
189.903
|
191.936
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.062
|
-1.738
|
-0.660
|
-0.196
|
— |
0.630
|
— |
0.639
|
— | — | — | — | — |
No JSON data available for plots.