Hg_chrom6_TN10mRNA_11951
Organism: Heterodera glycines Gene Locus: chr6:4864287-4867418 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 0.694 | 1.176 | 0.515 | 1.658 | 0.51 | 0.652 | 1.493 | 1.327 | 0.941 | 1.206 | 0.878 | 0.829 | 0.957 | 0.914 | 1.564 | 0.652 | 1.206 | 1.531 | 1.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11272
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.335
|
0.322
|
0.025
|
0.733
|
0.353
|
0.140
|
0.379
|
0.036
|
0.204
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004370
|
1.000
|
2.000
|
Hsc_gene_7434.t1;Hsc_gene_7434.t2
|
Hsc_gene_7434.t1;Hsc_gene_7434.t2;Hsc_gene_7436.t1
|
— |
Q20496.1 Probable rho GDP-dissociation inhibitor [Caenorhabditis elegans]
|
KAI1732097.1 RHO protein GDP dissociation inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005094|GO:0005515|GO:0005737|GO:0007266
|
GO:0005575_0.850|GO:0110165_0.849|GO:0008150_0.722|GO:0005622_0.714|GO:0009987_0.658|GO:0016020_0.608|GO:0005737_0.566|GO:0065007_0.548|GO:0003674_0.546|GO:0050789_0.541|GO:0050794_0.520
|
IPR000406+11-201_19-199_63-78_121-137_138-153_154-166_180-197+|IPR014756+16-201+|IPR024792+24-201+
|
— |
PF02115+19-199+RHO_protein_GDP_dissociation_inhibitor
|
G3DSA:2.70.50.30:FF:000004+7-201+Rho_GDP-dissociation_inhibitor_1
|
PTHR10980+11-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-201
|
1gdf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
22863.710
|
5.167
|
-5.000
|
31.841
|
12.438
|
51.741
|
48.259
|
15.423
|
16.418
|
48.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1715.154
|
2021.685
|
1459.449
|
937.667
|
1119.103
|
822.794
|
784.624
|
849.291
|
952.989
|
3791.077
|
2574.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.700
|
-1.246
|
-0.529
|
0.223
|
-0.429
|
— | — | — |
-2.086
|
— | — | — | — |
No JSON data available for plots.