Hg_chrom6_TN10mRNA_11953
Organism: Heterodera glycines Gene Locus: chr6:4873840-4875165 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.931 | 0.263 | 0.373 | 0.842 | 1.296 | 0.988 | 0.361 | 0.882 | 0.829 | 0.547 | 1.062 | 1.604 | 2.916 | 0.589 | 0.928 | 0.829 | 0.602 | 0.833 | 1.699 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11274
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
51-77
|
0.990
|
— | — |
0.000
|
— | — |
0.577
|
0.310
|
0.024
|
0.589
|
0.558
|
0.383
|
0.165
|
0.125
|
0.290
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010422
|
1.000
|
1.000
|
Hsc_gene_7431.t1
|
Hsc_gene_7431.t1
|
— |
Q969T9.1 WW domain-binding protein 2 [Homo sapiens]
|
KAI1732132.1 GRAM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003713
|
GO:0005575_0.912|GO:0110165_0.911|GO:0005622_0.821|GO:0043226_0.776|GO:0043229_0.765|GO:0005737_0.758|GO:0016020_0.663|GO:0008150_0.661|GO:0003674_0.614|GO:0009987_0.602|GO:0043227_0.588|GO:0005488_0.550|GO:0043228_0.519|GO:0043232_0.519
|
IPR004182+42-130+|IPR011993+13-135+|IPR044852+1-222+
|
— |
PF02893+42-130+GRAM_domain
|
— |
PTHR31606+1-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
180-277
|
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
30267.100
|
7.100
|
1.000
|
13.718
|
13.357
|
38.628
|
61.372
|
7.220
|
6.498
|
58.123
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
1622.423
|
1977.749
|
1607.428
|
1242.371
|
1470.872
|
1746.508
|
2076.711
|
2643.460
|
1397.508
|
1263.059
|
1320.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.527
|
-0.808
|
-0.264
|
0.211
|
0.263
|
0.260
|
0.490
|
— | — | — | — | — | — |
No JSON data available for plots.