Hg_chrom6_TN10mRNA_11954
Organism: Heterodera glycines Gene Locus: chr6:4875387-4877997 Feature type: polypeptideProtein Sequence
Length: 531
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.635 | 1.007 | 1.301 | 0.065 | 2.637 | 1.642 | 0.516 | 0.282 | 0.711 | 0.789 | 1.855 | 1.108 | 1.203 | 0.579 | 1.614 | 0.915 | 0.772 | 0.428 | 0.579 | 0.775 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11275
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,RKRRR,KKTNVEKKTKKRGRV,KKAQKSKAKTEEQKAKRE,KKKAAAAERNQGEKQQKK,KKRKLLEEIDFALPKKAQK,KREEATESKDEEEKASKRK,KRKIKQKKTNVEKKTKKRG,RKIKQKKTNVEKKTKKRGR,KKLKRAHFSKKKAAAAERN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.895
|
0.148
|
0.003
|
0.085
|
0.015
|
0.010
|
0.032
|
0.004
|
0.051
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010423
|
1.000
|
1.000
|
Hsc_gene_7430.t1
|
Hsc_gene_7430.t1
|
— |
Q8N9T8.3 Protein KRI1 homolog [Homo sapiens]
|
KAI1728417.1 protein KRI1 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.789|GO:0110165_0.786|GO:0005622_0.780|GO:0043226_0.746|GO:0043229_0.737|GO:0016020_0.706|GO:0043227_0.669|GO:0043231_0.646|GO:0005634_0.633|GO:0043228_0.608|GO:0043232_0.608|GO:0008150_0.558|GO:0009987_0.522
|
IPR018034+342-500+|IPR024626+340-409+
|
— |
PF12936+340-409+KRI1-like_family_C-terminal
|
— |
PTHR14490+342-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-531
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.654
|
62684.250
|
5.005
|
-13.500
|
43.691
|
8.286
|
65.537
|
34.463
|
20.716
|
22.976
|
38.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
2688.204
|
2375.872
|
2294.523
|
1815.387
|
1826.455
|
1605.345
|
1301.286
|
1446.150
|
4765.685
|
3437.248
|
4006.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.281
|
-0.525
|
-0.229
|
— |
-0.172
|
-0.292
|
-0.256
|
— | — |
-1.232
|
— | — | — |
No JSON data available for plots.