Hg_chrom6_TN10mRNA_11956
Organism: Heterodera glycines Gene Locus: chr6:4878492-4882496 Feature type: polypeptideProtein Sequence
Length: 812
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 0.831 | 0.985 | 0.51 | 1.273 | 0.821 | 0.528 | 1.355 | 1.669 | 1.664 | 0.802 | 1.884 | 1.197 | 0.805 | 1.156 | 1.038 | 0.888 | 1.194 | 0.663 | 0.507 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11276
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.860
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
KRLTKWLTKGKLRRI,RKTDGSRFERRRKLTK
|
— | — | — | — |
1-24
|
0.681
|
0.644
|
3.000
|
4.000
|
0.262
|
0.118
|
0.006
|
0.163
|
0.230
|
0.573
|
0.421
|
0.084
|
0.674
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004371
|
2.000
|
1.000
|
Hsc_gene_7429.t3
|
Hsc_gene_7429.t1;Hsc_gene_7429.t2;Hsc_gene_7429.t3;Hsc_gene_7429.t4
|
— |
A3QM97.1 Metal transporter cnnm-1 [Caenorhabditis elegans]
|
KAI1732134.1 metal transporter cnnm-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010960
|
GO:0005575_0.857|GO:0110165_0.816|GO:0016020_0.781|GO:0008150_0.738|GO:0071944_0.685|GO:0005886_0.684
|
IPR000644+469-528_473-521+|IPR002550+200-382_210-372+|IPR044751+396-518+|IPR045095+206-683+|IPR046342+379-528_389-528+
|
— |
PF00571+473-521+CBS_domain|PF01595+210-372+Cyclin_M_transmembrane_N-terminal_domain
|
G3DSA:3.10.580.10:FF:000006+379-528+DUF21_and_CBS_domain_protein
|
PTHR12064+206-683+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-812
|
5mmz_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
91745.520
|
6.063
|
-6.000
|
26.724
|
9.606
|
46.182
|
53.818
|
13.670
|
13.054
|
45.567
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3604.890
|
3792.555
|
7504.092
|
1962.839
|
1622.231
|
2299.876
|
3480.836
|
13136.201
|
2162.612
|
1474.950
|
1769.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
-1.088
|
-1.827
|
-0.306
|
0.518
|
0.608
|
2.411
|
-1.774
|
— | — | — | — | — |