Hg_chrom6_TN10mRNA_11957
Organism: Heterodera glycines Gene Locus: chr6:4883483-4884000 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 1.307 | 0.817 | 2.325 | 0.562 | 0.864 | 1.338 | 3.371 | 0.999 | 1.518 | 0.17 | 1.322 | 1.248 | 0.216 | 2.522 | 0.321 | 0.184 | 1.021 | 1.729 | 0.33 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11277
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.869
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
17-37
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.307
|
0.446
|
0.076
|
0.593
|
0.150
|
0.177
|
0.125
|
0.108
|
0.112
|
0.462
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAF7293194.1 RING finger protein [Mycena chlorophos]
|
XP_030530450
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.887|GO:0005575_0.778|GO:0110165_0.761|GO:0009987_0.687|GO:0003674_0.645|GO:0050896_0.624|GO:0005622_0.586|GO:0016020_0.571|GO:0051716_0.522|GO:0043226_0.504|GO:0065007_0.504
|
IPR001841+44-85_45-84_45-85+|IPR013083+35-89+|IPR051826+30-86+
|
SM00184+45-84+
|
PF13639+44-85+Ring_finger_domain
|
— |
PTHR22765+30-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
10114.710
|
8.806
|
8.000
|
28.090
|
14.607
|
40.449
|
59.551
|
20.225
|
7.865
|
47.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
cyan
|
37.050
|
9.781
|
57.858
|
42.417
|
38.061
|
26.939
|
58.908
|
165.157
|
0.000
|
12.422
|
7.098
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.335
|
1.979
|
— | — | — |
1.139
|
2.514
|
-1.346
|
— |
6.264
|
— | — | — |
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