Hg_chrom6_TN10mRNA_11958
Organism: Heterodera glycines Gene Locus: chr6:4885041-4885976 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.24 | 0.93 | 0.606 | 0.0 | 0.556 | 1.368 | 1.349 | 2.333 | 1.185 | 1.171 | 1.313 | 1.176 | 0.37 | 0.641 | 1.361 | 1.238 | 0.874 | 0.909 | 0.0 | 0.392 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KGKAGKDSGKAKSKKIISRSARAG
|
17-41
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.522
|
0.228
|
0.237
|
0.510
|
0.178
|
0.074
|
0.233
|
0.005
|
0.191
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002014
|
2.000
|
2.000
|
Hsc_gene_11242.t1;Hsc_gene_7428.t1
|
Hsc_gene_11242.t1;Hsc_gene_7109.t1;Hsc_gene_7428.t1
|
R08C7.3
|
Q27511.3 Histone H2A.V [Caenorhabditis elegans]
|
KAF7638333.1 Histone H2A [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.771|GO:0110165_0.764|GO:0005622_0.720|GO:0043226_0.674|GO:0016020_0.667|GO:0008150_0.661|GO:0043229_0.661|GO:0043227_0.613|GO:0043231_0.598|GO:0009987_0.577|GO:0005634_0.531
|
IPR002119+8-128_10-124_13-123_19-41_49-64_64-77_78-92_105-123+|IPR007125+14-96+|IPR009072+4-136_6-104+|IPR032454+98-124+|IPR032458+27-33+
|
SM00414+8-128+
|
PF00125+14-96+Core_histone_H2A/H2B/H3/H4|PF16211+98-124+C-terminus_of_histone_H2A
|
G3DSA:1.10.20.10:FF:000005+6-133+Histone_H2A
|
PTHR23430+13-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;110-150
|
1.000
|
21-109
|
9c62_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
15953.240
|
11.251
|
16.500
|
26.667
|
7.333
|
50.000
|
50.000
|
20.000
|
6.667
|
52.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
667.288
|
120.622
|
172.209
|
319.708
|
634.840
|
339.051
|
676.371
|
143.470
|
39.429
|
1987.463
|
1152.591
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.284
|
1.269
|
1.001
|
0.958
|
-0.890
|
1.009
|
-1.348
|
2.382
|
-5.769
|
— | — | — | — |
No JSON data available for plots.