Hg_chrom6_TN10mRNA_11959
Organism: Heterodera glycines Gene Locus: chr6:4886825-4890163 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 1.244 | 0.882 | 0.865 | 0.948 | 1.158 | 0.538 | 1.421 | 0.855 | 1.469 | 0.583 | 1.476 | 0.975 | 0.868 | 1.843 | 1.242 | 0.932 | 0.963 | 0.515 | 0.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRSMSIDRAKRSSK,RRTTLTVENPFPGTRRRQR
|
28-52
|
0.961
|
— | — | — | — |
0.000
|
— | — |
0.286
|
0.227
|
0.009
|
0.629
|
0.050
|
0.298
|
0.207
|
0.024
|
0.461
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010424
|
1.000
|
1.000
|
Hsc_gene_7427.t1
|
Hsc_gene_7427.t1
|
— | — |
KAI1700099.1 dock homology region 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0007264
|
GO:0008150_0.826|GO:0005575_0.812|GO:0110165_0.804|GO:0065007_0.755|GO:0009987_0.713|GO:0003674_0.673|GO:0050789_0.669|GO:0050794_0.655|GO:0005622_0.638|GO:0005488_0.617|GO:0005515_0.568|GO:0016020_0.524
|
IPR026791+40-562+|IPR027357+31-567+|IPR043161+38-185+|IPR043162+419-563+|IPR046769+40-179+|IPR046773+467-559+
|
— |
PF06920+40-179+DHR-2,_Lobe_A|PF20421+467-559+DHR-2,_Lobe_C
|
— |
PTHR23317+40-562+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
304-370
|
2.000
|
1-303;371-598
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
67214.650
|
9.047
|
22.500
|
26.254
|
9.030
|
50.502
|
49.498
|
15.719
|
10.535
|
50.669
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
307.402
|
72.572
|
184.468
|
226.051
|
543.511
|
446.606
|
978.053
|
134.079
|
0.769
|
374.803
|
214.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.114
|
1.502
|
0.404
|
1.234
|
-0.270
|
1.141
|
-1.846
|
3.011
|
-8.441
|
7.745
|
— | — | — |
No JSON data available for plots.