Hg_chrom6_TN10mRNA_11962
Organism: Heterodera glycines Gene Locus: chr6:4896945-4898381 Feature type: polypeptideProtein Sequence
Length: 211
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.102 | 0.776 | 0.0 | 0.711 | 1.094 | 0.677 | 0.711 | 0.948 | 1.409 | 0.862 | 1.673 | 1.975 | 0.638 | 1.161 | 1.286 | 1.01 | 1.221 | 1.094 | 1.533 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11282
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.563
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-18
|
0.988
|
1.000
|
1.000
|
1.000
|
0.104
|
0.284
|
0.088
|
0.139
|
0.910
|
0.095
|
0.313
|
0.096
|
0.291
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010425
|
1.000
|
1.000
|
Hsc_gene_7412.t1
|
Hsc_gene_7412.t1
|
— |
Q22169.1 Translocon-associated protein subunit beta [Caenorhabditis elegans]
|
KAI1732122.1 translocon-associated protein beta (TRAPB) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.732|GO:0110165_0.732|GO:0008150_0.703|GO:0016020_0.689|GO:0071944_0.645|GO:0005886_0.622|GO:0005622_0.610|GO:0005737_0.610|GO:0043226_0.592|GO:0043229_0.583|GO:0043227_0.568|GO:0043231_0.558|GO:0005773_0.533
|
— | — |
PF05753+37-198+Translocon-associated_protein_beta_(TRAPB)
|
— |
PTHR12861+6-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
205-211
|
1.000
|
1-204
|
8rjd_6
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
24132.720
|
9.827
|
7.500
|
21.327
|
15.166
|
45.498
|
54.502
|
12.796
|
8.531
|
47.393
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
sienna3
|
3091.748
|
1018.948
|
1913.454
|
3197.599
|
4150.815
|
4387.555
|
2434.324
|
2210.200
|
4411.411
|
2975.505
|
3590.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
1.513
|
0.849
|
0.344
|
— |
-0.840
|
-1.091
|
0.281
|
— | — | — | — | — |