Hg_chrom6_TN10mRNA_11963
Organism: Heterodera glycines Gene Locus: chr6:4898462-4899810 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.176 | 0.724 | 1.273 | 0.134 | 1.427 | 0.898 | 0.926 | 0.389 | 1.038 | 1.262 | 1.71 | 1.144 | 0.757 | 0.823 | 0.874 | 0.278 | 0.957 | 1.592 | 0.299 | 0.458 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11283
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRVIDFAVKVRVKKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.506
|
0.078
|
0.621
|
0.152
|
0.095
|
0.150
|
0.017
|
0.092
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010426
|
1.000
|
1.000
|
Hsc_gene_7411.t1
|
Hsc_gene_7411.t1
|
— |
P38117.3 Electron transfer flavoprotein subunit beta [Homo sapiens]
|
KAF7629284.1 ETF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009055
|
GO:0005575_0.830|GO:0110165_0.818|GO:0005622_0.779|GO:0005737_0.744|GO:0016020_0.716|GO:0008150_0.701|GO:0043226_0.673|GO:0043229_0.656|GO:0009987_0.638|GO:0043227_0.630|GO:0043231_0.601|GO:0008152_0.577|GO:0003674_0.554|GO:0044237_0.550|GO:0044238_0.511
|
IPR012255+1-257+|IPR014729+1-257+|IPR014730+23-220_26-214+|IPR033948+2-202+
|
SM00893+23-220+
|
PF01012+26-214+Electron_transfer_flavoprotein_domain
|
G3DSA:3.40.50.620:FF:000011+1-256+Electron_transfer_flavoprotein_subunit_beta
|
PTHR21294+1-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
1t9g_S
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
28093.460
|
7.174
|
1.000
|
31.907
|
5.447
|
46.304
|
53.696
|
16.342
|
15.564
|
50.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
3052.513
|
1317.229
|
2455.604
|
2412.179
|
4055.112
|
4736.290
|
2635.238
|
3813.202
|
5393.980
|
1274.938
|
3040.242
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
0.736
|
— |
0.718
|
0.239
|
-0.835
|
-0.416
|
-0.390
|
1.974
|
— | — | — | — |
No JSON data available for plots.