Hg_chrom6_TN10mRNA_11964
Organism: Heterodera glycines Gene Locus: chr6:4900083-4902176 Feature type: polypeptideProtein Sequence
Length: 361
(Signal peptide: 1-39)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 0.773 | 1.36 | 0.287 | 0.6 | 0.781 | 0.923 | 2.355 | 1.6 | 1.123 | 0.504 | 1.141 | 2.078 | 0.906 | 1.3 | 1.068 | 0.908 | 0.923 | 1.278 | 0.978 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11284
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— | — | — | — | — | — |
1-39
|
0.509
|
0.920
|
1.000
|
1.000
|
0.180
|
0.050
|
0.007
|
0.170
|
0.712
|
0.606
|
0.594
|
0.016
|
0.406
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010427
|
1.000
|
1.000
|
Hsc_gene_7410.t1
|
Hsc_gene_7410.t1
|
— |
P59481.1 VIP36-like protein [Mus musculus]
|
KAF7629283.1 L-type lectin-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.823|GO:0110165_0.817|GO:0071944_0.755|GO:0016020_0.745|GO:0008150_0.725|GO:0005886_0.709|GO:0009987_0.665|GO:0005622_0.636|GO:0005737_0.636|GO:0043226_0.606|GO:0043227_0.596|GO:0043229_0.596|GO:0043231_0.596|GO:0005773_0.561|GO:0012505_0.535
|
IPR005052+56-283_58-284+|IPR013320+57-282+|IPR051136+24-289+
|
— |
PF03388+58-284+Legume-like_lectin_family
|
G3DSA:2.60.120.200:FF:000017+76-309+Vesicular_integral-membrane_protein_VIP36
|
PTHR12223+24-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-361
|
2e6v_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
40953.470
|
6.855
|
3.500
|
25.485
|
17.175
|
44.875
|
55.125
|
14.404
|
11.080
|
49.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
tan
|
1813.209
|
1969.363
|
1778.422
|
1965.239
|
2242.639
|
3148.634
|
2969.285
|
2124.331
|
1403.302
|
806.096
|
1062.042
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.377
|
-0.140
|
0.253
|
0.158
|
0.505
|
— |
-0.671
|
0.625
|
— | — | — | — | — |