Hg_chrom6_TN10mRNA_11965
Organism: Heterodera glycines Gene Locus: chr6:4902977-4905206 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 0.768 | 0.72 | 0.91 | 0.66 | 1.608 | 0.629 | 1.485 | 0.587 | 1.07 | 0.9 | 3.494 | 0.733 | 1.142 | 2.29 | 0.943 | 1.082 | 0.55 | 1.523 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11285
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RGGRPNSSSRARQMPRHKTRRRRWHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.518
|
0.213
|
0.048
|
0.415
|
0.061
|
0.016
|
0.090
|
0.294
|
0.083
|
0.245
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002317
|
3.000
|
1.000
|
Hsc_gene_7457.t1
|
Hsc_gene_7457.t1
|
— |
Q86Z02.1 Homeodomain-interacting protein kinase 1 [Homo sapiens]
|
KAI1725654.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0009987_0.915|GO:0005575_0.914|GO:0110165_0.914|GO:0005622_0.864|GO:0016020_0.836|GO:0043226_0.822|GO:0065007_0.816|GO:0050789_0.813|GO:0050794_0.804|GO:0043229_0.801|GO:0043227_0.760|GO:0043231_0.735|GO:0005634_0.732|GO:0050896_0.715|GO:0003674_0.660|GO:0008152_0.651|GO:0044237_0.649|GO:0005737_0.623|GO:0051716_0.593|GO:0032501_0.592|GO:0023052_0.582|GO:0007154_0.578|GO:0043170_0.569|GO:0007165_0.554|GO:0044238_0.550|GO:0031974_0.514|GO:0031981_0.514|GO:0043233_0.514|GO:0070013_0.514
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-303
|
1.000
|
1-132
|
6p5s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
34728.200
|
11.191
|
32.500
|
28.053
|
9.241
|
50.825
|
49.175
|
20.132
|
7.921
|
46.865
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
326.825
|
487.418
|
449.160
|
349.180
|
331.177
|
304.278
|
281.170
|
368.642
|
281.476
|
254.619
|
266.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.348
|
-0.618
|
-0.254
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.