Hg_chrom6_TN10mRNA_11972
Organism: Heterodera glycines Gene Locus: chr6:4929938-4937545 Feature type: polypeptideProtein Sequence
Length: 1,507
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.111 | 0.965 | 0.549 | 1.006 | 1.991 | 0.577 | 1.559 | 0.782 | 1.013 | 0.985 | 1.132 | 0.793 | 1.021 | 1.49 | 1.621 | 1.131 | 0.664 | 0.459 | 0.273 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,PKPS,RKRRK,KKEEEKEQKKRGQK,RKVRKKGSGRKSKKE,KRKIDRTLNGGRKRKRSE,KKAVSGVPIEGKQQPKKRG,KRTPNIDPLTGARKVRKKG,KRNLPDDLSEILWTKRKID
|
24-44
|
0.929
|
50-76
|
0.971
|
— | — |
0.000
|
— | — |
0.929
|
0.139
|
0.030
|
0.264
|
0.049
|
0.013
|
0.020
|
0.040
|
0.096
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010429
|
1.000
|
1.000
|
Hsc_gene_7415.t1
|
Hsc_gene_7415.t1
|
— | — |
CAD2181999.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-697;1005-1206;1365-1507
|
2.000
|
698-1004;1207-1364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.909
|
167636.130
|
9.778
|
60.500
|
28.268
|
7.498
|
59.058
|
40.942
|
16.921
|
11.347
|
51.958
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1958.432
|
3133.377
|
2467.599
|
1643.571
|
1508.996
|
1660.580
|
2028.987
|
1719.139
|
1879.674
|
1847.543
|
1861.313
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.575
|
-1.068
|
-0.477
|
-0.155
|
0.153
|
0.298
|
— |
0.380
|
— | — | — | — | — |
No JSON data available for plots.