Hg_chrom6_TN10mRNA_11973
Organism: Heterodera glycines Gene Locus: chr6:4938854-4940787 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 1.072 | 0.903 | 0.489 | 1.596 | 1.273 | 1.098 | 1.596 | 0.946 | 1.15 | 0.752 | 1.252 | 0.591 | 0.477 | 1.086 | 1.469 | 1.105 | 0.591 | 0.818 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11293
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.531
|
0.246
|
0.015
|
0.598
|
0.200
|
0.255
|
0.333
|
0.026
|
0.269
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010430
|
1.000
|
1.000
|
Hsc_gene_7416.t1
|
Hsc_gene_7416.t1
|
— |
B5DEL1.1 BTB/POZ domain-containing protein KCTD5 [Rattus norvegicus]
|
KAF7629291.1 START domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0051260
|
GO:0008150_0.685|GO:0005575_0.670|GO:0110165_0.669|GO:0003674_0.634|GO:0009987_0.612|GO:0005488_0.588|GO:0065007_0.570|GO:0050789_0.553|GO:0005622_0.542|GO:0050794_0.518|GO:0016020_0.515
|
IPR000210+89-162_91-193+|IPR003131+93-185+|IPR011333+83-155_91-194+
|
SM00225+91-193+
|
PF02214+93-185+BTB/POZ_domain
|
G3DSA:3.30.710.10:FF:000005+86-155+Potassium_channel_tetramerization_domain-containing_17
|
PTHR14958+63-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87
|
1.000
|
88-282
|
3drz_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
30977.170
|
5.096
|
-7.500
|
28.014
|
9.220
|
54.610
|
45.390
|
13.475
|
14.539
|
51.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
623.866
|
1584.080
|
826.114
|
625.361
|
705.864
|
599.497
|
714.820
|
681.519
|
386.149
|
288.330
|
330.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.169
|
-1.478
|
-0.293
|
0.143
|
-0.221
|
0.264
|
— | — | — | — | — | — | — |
No JSON data available for plots.