Hg_chrom6_TN10mRNA_11974
Organism: Heterodera glycines Gene Locus: chr6:4942688-4944492 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.45 | 1.065 | 1.344 | 1.093 | 0.763 | 0.722 | 0.503 | 0.704 | 1.408 | 1.047 | 0.8 | 0.207 | 2.347 | 0.948 | 1.796 | 1.258 | 0.693 | 1.014 | 1.354 | 1.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11294
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRIFRDHFSLFLRSKRS
|
19-47
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.123
|
0.953
|
0.108
|
0.298
|
0.042
|
0.027
|
0.083
|
0.184
|
0.040
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004373
|
2.000
|
1.000
|
Hsc_gene_7417.t1
|
Hsc_gene_7417.t1
|
— | — |
KAF7629291.1 START domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.782|GO:0110165_0.779|GO:0008150_0.729|GO:0005622_0.706|GO:0005737_0.676
|
IPR002913+86-228_86-279+|IPR023393+68-279+|IPR051213+86-282+
|
— |
PF01852+86-228+START_domain
|
G3DSA:3.30.530.20:FF:000017+67-279+Phosphatidylcholine_transfer_protein,_putative
|
PTHR19308+86-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
33267.900
|
8.537
|
8.000
|
27.465
|
16.197
|
47.887
|
52.113
|
15.493
|
11.972
|
47.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
824.799
|
686.027
|
695.728
|
726.545
|
749.593
|
613.567
|
634.056
|
608.475
|
553.623
|
1425.533
|
1051.857
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.210
|
— |
0.172
|
— |
-0.274
|
— | — |
0.202
|
— | — | — | — | — |
No JSON data available for plots.