Hg_chrom6_TN10mRNA_11975
Organism: Heterodera glycines Gene Locus: chr6:4944676-4946736 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.526 | 1.237 | 0.677 | 1.742 | 0.399 | 0.818 | 0.475 | 1.995 | 1.478 | 1.689 | 0.363 | 1.095 | 2.955 | 0.869 | 1.357 | 0.988 | 0.785 | 0.806 | 1.637 | 1.017 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11295
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRCSSLFFCCRRFCRRSFR
|
42-62
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.072
|
0.065
|
0.004
|
0.175
|
0.597
|
0.353
|
0.652
|
0.002
|
0.348
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010431
|
1.000
|
1.000
|
Hsc_gene_7418.t1
|
Hsc_gene_7418.t1
|
— |
B8A4F0.1 Palmitoyltransferase ZDHHC16A [Danio rerio]
|
KAF7629294.1 Palmitoyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.846|GO:0005575_0.800|GO:0110165_0.800|GO:0009987_0.785|GO:0071944_0.784|GO:0005886_0.783|GO:0016020_0.783|GO:0003674_0.642|GO:0005622_0.626|GO:0005737_0.626|GO:0005773_0.626|GO:0043226_0.626|GO:0043227_0.626|GO:0043229_0.626|GO:0043231_0.626|GO:0012505_0.585|GO:0065007_0.561|GO:0050789_0.538
|
IPR001594+117-258+
|
— |
PF01529+117-258+DHHC_palmitoyltransferase
|
— |
PTHR12246+23-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
335-376
|
1.000
|
1-334
|
8hf3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
44031.510
|
8.530
|
18.500
|
19.149
|
20.213
|
39.362
|
60.638
|
13.032
|
6.117
|
44.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
601.568
|
523.677
|
521.260
|
508.092
|
699.467
|
938.962
|
737.908
|
678.308
|
364.220
|
630.818
|
516.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.237
|
-0.181
|
— |
0.430
|
0.440
|
-0.343
|
-0.574
|
— | — | — | — | — | — |
No JSON data available for plots.