Hg_chrom6_TN10mRNA_11978
Organism: Heterodera glycines Gene Locus: chr6:4955096-4958763 Feature type: polypeptideProtein Sequence
Length: 637
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 1.132 | 1.056 | 0.162 | 0.89 | 1.288 | 0.654 | 0.942 | 1.291 | 1.294 | 0.833 | 1.385 | 2.093 | 0.875 | 0.897 | 1.032 | 0.824 | 0.951 | 2.053 | 1.339 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11298
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
32-52
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.180
|
0.350
|
0.004
|
0.100
|
0.941
|
0.218
|
0.605
|
0.060
|
0.252
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010433
|
1.000
|
1.000
|
Hsc_gene_7421.t1
|
Hsc_gene_7421.t1
|
— |
Q6DEL2.1 Putative lipid scramblase CLPTM1 [Danio rerio]
|
KAI1725642.1 cleft lip and palate transmembrane protein 1 (CLPTM1) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.930|GO:0110165_0.930|GO:0016020_0.893|GO:0071944_0.861|GO:0005886_0.856|GO:0008150_0.688|GO:0009987_0.644|GO:0003674_0.605|GO:0065007_0.543
|
IPR008429+17-635_35-484+
|
— |
PF05602+35-484+Cleft_lip_and_palate_transmembrane_protein_1_(CLPTM1)
|
— |
PTHR21347+17-635+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;591-637
|
1.000
|
20-590
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
73716.090
|
6.252
|
-2.000
|
22.920
|
16.641
|
45.055
|
54.945
|
11.774
|
11.146
|
45.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
3129.640
|
4075.272
|
2221.466
|
2346.562
|
2501.204
|
2795.261
|
2851.775
|
2423.058
|
854.519
|
5845.812
|
3706.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.105
|
-0.934
|
0.188
|
— |
0.175
|
— |
-0.309
|
0.376
|
— | — | — | — | — |
No JSON data available for plots.