SCN Proteipedia

Hg_chrom6_TN10mRNA_11979

Organism: Heterodera glycines Gene Locus: chr6:4959043-4962768 Feature type: polypeptide

Protein Sequence

Length: 811

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.774	1.147	0.762	0.723	0.74	1.834	0.675	2.836	0.849	0.816	0.617	1.088	1.233	1.304	1.158	1.497	1.092	1.009	0.569	0.58	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11299	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	KKAIESLIKKLKDKRD	—	—	38-96	0.993	—	—	0.000	—	—	0.794	0.115	0.007	0.471	0.106	0.112	0.144	0.022	0.164	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010434	1.000	1.000	Hsc_gene_7422.t1	Hsc_gene_7422.t1	—	P97471.2 Mothers against decapentaplegic homolog 4 [Mus musculus]	KAF7629295.1 Mothers against decapentaplegic-like protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005667\|GO:0006355	GO:0008150_0.921\|GO:0065007_0.862\|GO:0009987_0.858\|GO:0050789_0.855\|GO:0050794_0.850\|GO:0005575_0.801\|GO:0110165_0.797\|GO:0032501_0.788\|GO:0032502_0.778\|GO:0048856_0.766\|GO:0005622_0.731\|GO:0048518_0.728\|GO:0007275_0.705\|GO:0008152_0.699\|GO:0043170_0.699\|GO:0019222_0.696\|GO:0050896_0.694\|GO:0044238_0.692\|GO:0003674_0.686\|GO:0060255_0.682\|GO:0080090_0.682\|GO:0048522_0.679\|GO:0016020_0.663\|GO:0005488_0.647\|GO:0051716_0.638\|GO:0043226_0.630\|GO:0031323_0.611\|GO:0044237_0.611\|GO:0048519_0.608\|GO:0043229_0.606\|GO:0009058_0.591\|GO:0009059_0.584\|GO:0009889_0.584\|GO:0010467_0.584\|GO:0010468_0.584\|GO:0010556_0.584\|GO:0031326_0.584\|GO:0044249_0.584\|GO:0006139_0.582\|GO:0048869_0.581\|GO:0030154_0.579\|GO:0007154_0.578\|GO:0023052_0.576\|GO:0043227_0.573\|GO:0034654_0.569\|GO:0043231_0.567\|GO:0019219_0.561\|GO:0007165_0.560\|GO:0016070_0.560\|GO:0090304_0.560\|GO:0032774_0.559\|GO:0097159_0.559\|GO:0141187_0.559\|GO:0051252_0.558\|GO:0006351_0.548\|GO:0006355_0.548\|GO:2001141_0.548\|GO:0048513_0.542\|GO:0003676_0.540\|GO:0048523_0.538\|GO:0048731_0.528\|GO:0005634_0.524\|GO:0003677_0.502	IPR001132+557-792_558-791_559-811+\|IPR003619+113-222_119-219+\|IPR008984+555-803+\|IPR013019+100-224+\|IPR013790+94-804+\|IPR017855+550-809+\|IPR036578+88-224_112-219+	SM00523+113-222+\|SM00524+557-792+	PF03165+119-219+MH1_domain\|PF03166+558-791+MH2_domain	—	PTHR13703+94-804+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-101;225-485;698-749	3.000	102-224;486-697;750-811	5nm9_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.892	90116.780	8.458	32.000	24.044	12.824	53.268	46.732	15.413	8.631	54.131

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey60	1035.589	2008.174	881.188	688.188	936.376	957.138	2037.883	1055.298	501.283	943.146	753.776

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.419	-1.682	-0.247	0.413	—	1.101	—	1.093	—	—	—	—	—

No JSON data available for plots.

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