Hg_chrom6_TN10mRNA_11984
Organism: Heterodera glycines Gene Locus: chr6:4980586-4981899 Feature type: polypeptideProtein Sequence
Length: 203
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 0.573 | 0.627 | 1.529 | 0.985 | 0.884 | 0.704 | 0.985 | 1.752 | 0.865 | 0.896 | 1.159 | 1.095 | 0.758 | 2.413 | 1.126 | 1.454 | 0.373 | 1.137 | 1.449 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11304
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
GKEKCQRNTEKRRRKEERKRDGER
|
— | — |
15-56
|
0.981
|
— | — |
0.000
|
— | — |
0.113
|
0.062
|
0.034
|
0.178
|
0.234
|
0.148
|
0.152
|
0.020
|
0.737
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004372
|
2.000
|
1.000
|
Hsc_gene_7426.t1
|
Hsc_gene_7426.t1
|
— |
Q9R0W5.1 Acid-sensing ion channel 5 [Rattus norvegicus]
|
KAI1725634.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
GO:0008150_0.925|GO:0009987_0.828|GO:0005575_0.793|GO:0110165_0.789|GO:0003674_0.751|GO:0016020_0.695|GO:0051179_0.678|GO:0051234_0.668|GO:0006810_0.665|GO:0055085_0.635|GO:0006811_0.603|GO:0034220_0.602|GO:0098660_0.572|GO:0006812_0.571|GO:0098662_0.571|GO:0030001_0.542|GO:0098655_0.542|GO:0005215_0.540|GO:0022857_0.538|GO:0005216_0.537|GO:0015075_0.537|GO:0015267_0.537|GO:0022803_0.537
|
IPR001873+1-11_5-143_5-154_53-73_123-139+
|
— |
PF00858+5-143+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+5-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
164-203
|
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
23659.210
|
10.113
|
19.000
|
29.064
|
12.315
|
51.724
|
48.276
|
19.704
|
9.360
|
44.335
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
salmon
|
24.961
|
1.296
|
16.683
|
7.002
|
4.135
|
1.889
|
9.336
|
44.285
|
5.529
|
73.321
|
44.267
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.455
|
2.293
|
-1.146
|
— | — |
2.319
|
4.450
|
-2.103
|
— | — | — | — | — |
No JSON data available for plots.