Hg_chrom6_TN10mRNA_11988
Organism: Heterodera glycines Gene Locus: chr6:4994328-4997595 Feature type: polypeptideProtein Sequence
Length: 157
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 0.593 | 0.579 | 0.879 | 1.274 | 0.817 | 0.607 | 0.637 | 1.274 | 1.894 | 0.869 | 1.499 | 2.3 | 0.245 | 1.56 | 0.819 | 0.835 | 1.544 | 0.49 | 0.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11308
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRMVSREEGLQFAKKHRM
|
4-24
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.337
|
0.283
|
0.112
|
0.483
|
0.135
|
0.127
|
0.352
|
0.038
|
0.123
|
0.327
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004375
|
2.000
|
1.000
|
Hsc_gene_7375.t1
|
Hsc_gene_7375.t1
|
— |
Q8MXS1.1 Ras-related protein Rab-18 [Caenorhabditis elegans]
|
KAH7731715.1 member Ras oncogene family RAB18A [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.904|GO:0110165_0.899|GO:0016020_0.744|GO:0008150_0.742|GO:0005622_0.727|GO:0005886_0.705|GO:0071944_0.705|GO:0009987_0.652|GO:0043226_0.640|GO:0005737_0.630|GO:0043229_0.624|GO:0043227_0.575|GO:0043231_0.553|GO:0006810_0.509|GO:0051179_0.509|GO:0051234_0.509
|
IPR001806+1-157_39-148_55-145+|IPR009653+18-40+|IPR027417+43-153_53-147+|IPR050227+55-147+
|
SM00173+35-148+|SM00174+39-148+|SM00175+21-148+
|
PF00071+55-145+Ras_family|PF06842+18-40+Protein_of_unknown_function_(DUF1242)
|
— |
PTHR47977+55-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-157
|
1x3s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
17953.240
|
8.881
|
5.000
|
25.478
|
11.465
|
42.038
|
57.962
|
14.650
|
10.828
|
42.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
110.033
|
26.438
|
92.768
|
22.445
|
29.883
|
63.150
|
245.492
|
96.410
|
175.762
|
133.355
|
151.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.584
|
— |
-1.937
|
— |
1.093
|
1.969
|
0.502
|
1.492
|
— | — | — | — | — |
No JSON data available for plots.