Hg_chrom6_TN10mRNA_11990
Organism: Heterodera glycines Gene Locus: chr6:5004481-5008033 Feature type: polypeptideProtein Sequence
Length: 726
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.801 | 0.737 | 1.152 | 0.712 | 2.273 | 0.812 | 0.426 | 1.86 | 0.796 | 1.117 | 1.252 | 0.972 | 1.071 | 0.742 | 1.49 | 0.984 | 0.858 | 0.772 | 0.742 | 0.729 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11310
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
nucleus
|
KRRR,PQEKRHR,RKTVAALEAENKEQRK
|
— | — | — | — |
1-19
|
0.989
|
1.000
|
1.000
|
1.000
|
0.169
|
0.053
|
0.009
|
0.236
|
0.559
|
0.822
|
0.851
|
0.248
|
0.521
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010437
|
1.000
|
1.000
|
Hsc_gene_7409.t1
|
— | — |
Q10651.2 Amyloid-beta-like protein [Caenorhabditis elegans]
|
KAI1725626.1 e2 domain of amyloid precursor protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008201|GO:0016020|GO:0046914
|
GO:0005575_0.941|GO:0110165_0.939|GO:0008150_0.900|GO:0016020_0.880|GO:0005886_0.843|GO:0071944_0.843|GO:0005622_0.810|GO:0043226_0.773|GO:0043229_0.737|GO:0032501_0.712|GO:0043227_0.708|GO:0032502_0.691|GO:0048856_0.691|GO:0005737_0.688|GO:0009987_0.682|GO:0043231_0.669|GO:0007275_0.661|GO:0098590_0.529|GO:0065007_0.520|GO:0042995_0.509|GO:0120025_0.509|GO:0050789_0.501
|
IPR008154+34-202_38-203+|IPR008155+31-722_191-209_313-336_656-681_700-722+|IPR011178+140-202+|IPR011993+697-725+|IPR015849+42-139+|IPR019543+678-721+|IPR019744+195-202+|IPR019745+711-718+|IPR024329+244-454_250-437+|IPR036176+260-464_269-449+|IPR036454+29-131_40-130+|IPR036669+133-202_139-203+
|
SM00006+34-202+
|
PF02177+42-139+Amyloid_A4_N-terminal_heparin-binding|PF10515+678-721+Beta-amyloid_precursor_protein_C-terminus|PF12924+140-202+Copper-binding_of_amyloid_precursor,_CuBD|PF12925+250-437+E2_domain_of_amyloid_precursor_protein
|
— |
PTHR23103+31-722+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
215-371;510-653
|
3.000
|
1-214;372-509;654-726
|
3k6b_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
84172.190
|
5.353
|
-18.500
|
39.256
|
11.019
|
57.713
|
42.287
|
19.284
|
19.972
|
43.113
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
tan
|
9511.665
|
9091.122
|
18715.765
|
10127.195
|
10799.540
|
18520.591
|
7987.490
|
14823.409
|
7584.267
|
2150.918
|
4479.496
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
— |
-0.779
|
— |
0.793
|
-1.203
|
-0.426
|
-0.749
|
1.707
|
— |
2.443
|
— | — |