Hg_chrom6_TN10mRNA_11994
Organism: Heterodera glycines Gene Locus: chr6:5031484-5037783 Feature type: polypeptideProtein Sequence
Length: 797
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 0.875 | 0.958 | 1.038 | 1.15 | 1.255 | 0.881 | 1.004 | 1.032 | 1.356 | 0.684 | 1.624 | 1.011 | 0.651 | 1.203 | 1.04 | 0.946 | 1.426 | 0.386 | 0.812 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11314
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
AEKLGRRGRRGSRK
|
53-84
|
0.900
|
— | — | — | — |
0.000
|
— | — |
0.433
|
0.064
|
0.007
|
0.582
|
0.138
|
0.421
|
0.231
|
0.009
|
0.171
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002319
|
1.000
|
3.000
|
Hsc_gene_7400.t1;Hsc_gene_7400.t2;Hsc_gene_7400.t3
|
Hsc_gene_7400.t1;Hsc_gene_7400.t2;Hsc_gene_7400.t3;Hsc_gene_7402.t1
|
— |
Q8K2G4.1 Bardet-Biedl syndrome 7 protein homolog [Mus musculus]
|
KAI1725337.1 bardet-Biedl syndrome 7 protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0005575_0.908|GO:0009987_0.908|GO:0110165_0.907|GO:0005622_0.826|GO:0016020_0.807|GO:0071944_0.767|GO:0043226_0.766|GO:0005886_0.748|GO:0043229_0.735|GO:0043227_0.721|GO:0065007_0.640|GO:0032991_0.629|GO:0050789_0.622|GO:0098590_0.607|GO:0050794_0.603|GO:0042995_0.600|GO:0043228_0.600|GO:0043232_0.600|GO:0005737_0.597|GO:0120025_0.594|GO:0050896_0.582|GO:0005856_0.577|GO:0005929_0.559|GO:0030990_0.559|GO:0015630_0.557|GO:0051179_0.551|GO:0005815_0.550
|
— | — | — | — |
PTHR16074+1-788+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
367-411
|
2.000
|
1-366;412-797
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
88334.090
|
5.898
|
-6.000
|
24.592
|
8.908
|
46.299
|
53.701
|
12.422
|
12.171
|
51.443
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
496.196
|
1424.863
|
790.154
|
276.543
|
87.234
|
43.948
|
151.514
|
260.372
|
221.809
|
866.514
|
590.212
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.080
|
-2.502
|
-1.406
|
-1.695
|
-0.975
|
1.796
|
2.463
|
-0.639
|
— | — | — | — | — |
No JSON data available for plots.