Hg_chrom6_TN10mRNA_11996
Organism: Heterodera glycines Gene Locus: chr6:5038269-5040582 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 1.1 | 0.547 | 0.593 | 0.358 | 0.827 | 0.845 | 0.86 | 1.625 | 1.308 | 0.391 | 2.783 | 2.389 | 0.827 | 0.834 | 1.045 | 1.093 | 1.401 | 1.323 | 0.886 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11316
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.561
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRVCDYSELPFLRRHSKR
|
36-64
|
0.956
|
— | — | — | — |
0.000
|
— | — |
0.037
|
0.111
|
0.017
|
0.166
|
0.324
|
0.673
|
0.352
|
0.002
|
0.567
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010442
|
1.000
|
1.000
|
Hsc_gene_7399.t1
|
Hsc_gene_7399.t1
|
— |
P34479.2 Probable amino acid transporter skat-1 [Caenorhabditis elegans]
|
KAI1725345.1 transmembrane amino acid transporter protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.895|GO:0009987_0.840|GO:0005575_0.822|GO:0110165_0.822|GO:0006810_0.796|GO:0051179_0.796|GO:0051234_0.796|GO:0003674_0.795|GO:0016020_0.773|GO:0055085_0.771|GO:0005215_0.745|GO:0022857_0.745|GO:0071944_0.660|GO:0005886_0.647|GO:0003333_0.618|GO:0006865_0.618|GO:0015171_0.584|GO:0043226_0.572|GO:0043227_0.558|GO:0005622_0.536|GO:0005737_0.536|GO:0015711_0.520|GO:0015849_0.506|GO:1903825_0.506|GO:0046942_0.503|GO:1905039_0.503
|
IPR013057+49-452+
|
— |
PF01490+49-452+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+53-450+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-465
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
51795.870
|
8.795
|
11.000
|
13.548
|
15.054
|
35.484
|
64.516
|
8.387
|
5.161
|
51.183
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1462.691
|
2314.577
|
1122.757
|
978.820
|
1118.738
|
1382.313
|
1801.004
|
1774.324
|
351.700
|
2200.796
|
1408.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.274
|
-1.379
|
— |
0.161
|
0.320
|
0.390
|
— | — |
-2.786
|
— | — | — | — |
No JSON data available for plots.