Hg_chrom6_TN10mRNA_11998
Organism: Heterodera glycines Gene Locus: chr6:5043355-5044751 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.238 | 0.619 | 1.175 | 0.262 | 1.394 | 0.39 | 0.815 | 0.951 | 1.352 | 1.079 | 0.576 | 0.447 | 1.267 | 0.585 | 1.785 | 1.521 | 1.184 | 0.634 | 0.292 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11318
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
GRKRKKRRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.209
|
0.187
|
0.026
|
0.189
|
0.704
|
0.222
|
0.603
|
0.023
|
0.219
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004376
|
1.000
|
2.000
|
Hsc_gene_7397.t1;Hsc_gene_7397.t2
|
Hsc_gene_7397.t1;Hsc_gene_7397.t2
|
— | — |
KAI1725343.1 VMA21-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070072
|
GO:0008150_0.928|GO:0005575_0.912|GO:0110165_0.908|GO:0016020_0.848|GO:0003674_0.832|GO:0005622_0.776|GO:0065007_0.769|GO:0005737_0.756|GO:0043226_0.746|GO:0043229_0.729|GO:0003824_0.713|GO:0043227_0.710|GO:0043231_0.702|GO:0016787_0.680|GO:0065009_0.679|GO:0016462_0.670|GO:0016817_0.670|GO:0016818_0.670|GO:0016887_0.670|GO:0017111_0.670|GO:0043462_0.670|GO:0140657_0.670|GO:0005773_0.629|GO:0000323_0.550|GO:0005764_0.546
|
IPR019013+113-175+
|
— |
PF09446+113-175+VMA21-like_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-101
|
1.000
|
102-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
29006.270
|
5.450
|
-3.500
|
29.278
|
10.266
|
51.331
|
48.669
|
14.449
|
14.829
|
52.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
2416.921
|
2239.329
|
2377.784
|
1957.585
|
1908.856
|
1820.403
|
2469.377
|
1701.811
|
4201.006
|
1995.096
|
2940.486
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.143
|
-0.331
|
-0.172
|
— | — |
0.450
|
-0.201
|
0.679
|
— | — | — | — | — |
No JSON data available for plots.