Hg_chrom6_TN10mRNA_11999
Organism: Heterodera glycines Gene Locus: chr6:5044839-5045234 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.392 | 0.784 | 0.817 | 0.387 | 0.936 | 0.0 | 0.401 | 1.124 | 1.748 | 1.67 | 0.851 | 3.966 | 1.873 | 0.864 | 0.917 | 1.445 | 0.368 | 1.532 | 2.593 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11319
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.199
|
0.313
|
0.037
|
0.095
|
0.839
|
0.194
|
0.513
|
0.018
|
0.090
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
A5JYQ9.1 Vacuolar ATPase assembly integral membrane protein VMA21 homolog [Caenorhabditis elegans]
|
KAH7731683.1 vacuolar ATPase assembly integral membrane protein VMA21 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070072
|
GO:0005575_0.942|GO:0110165_0.933|GO:0008150_0.930|GO:0016020_0.867|GO:0065007_0.833|GO:0005622_0.797|GO:0005737_0.791|GO:0043226_0.783|GO:0003674_0.769|GO:0043229_0.768|GO:0043227_0.757|GO:0043231_0.757|GO:0065009_0.688|GO:0005773_0.675|GO:0003824_0.670|GO:0016462_0.670|GO:0016787_0.670|GO:0016817_0.670|GO:0016818_0.670|GO:0016887_0.670|GO:0017111_0.670|GO:0043462_0.670|GO:0140657_0.670|GO:0000323_0.552|GO:0005764_0.546
|
IPR019013+17-76_17-84+
|
— |
PF09446+17-76+VMA21-like_domain
|
— |
PTHR31792+17-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
10352.340
|
7.164
|
1.000
|
22.472
|
14.607
|
38.202
|
61.798
|
12.360
|
10.112
|
42.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
294.856
|
357.704
|
348.722
|
218.078
|
216.472
|
237.242
|
232.967
|
363.330
|
308.353
|
318.288
|
314.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.268
|
-0.851
|
-0.567
|
— | — | — |
0.510
|
-0.502
|
— | — | — | — | — |
No JSON data available for plots.