Hg_chrom6_TN10mRNA_12001
Organism: Heterodera glycines Gene Locus: chr6:5049824-5051343 Feature type: polypeptideProtein Sequence
Length: 418
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.196 | 0.723 | 0.826 | 1.65 | 2.113 | 0.859 | 0.826 | 1.077 | 0.478 | 0.938 | 0.652 | 1.126 | 1.595 | 1.104 | 1.465 | 1.094 | 0.471 | 0.834 | 0.736 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11321
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — |
1-41
|
0.943
|
— | — |
0.000
|
— | — |
0.576
|
0.142
|
0.016
|
0.602
|
0.098
|
0.114
|
0.119
|
0.018
|
0.031
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010445
|
1.000
|
1.000
|
Hsc_gene_7395.t1
|
Hsc_gene_7395.t1
|
— |
Q2YDC9.1 Programmed cell death protein 2 [Bos taurus]
|
KAI1725341.1 MYND finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737
|
GO:0005575_0.737|GO:0110165_0.737|GO:0008150_0.714|GO:0009987_0.665|GO:0016020_0.625|GO:0043226_0.512
|
IPR002893+144-181+|IPR007320+294-395+
|
— |
PF01753+144-181+MYND_finger|PF04194+294-395+Programmed_cell_death_protein_2,_C-terminal_putative_domain
|
— |
PTHR12298+10-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
218-296;406-418
|
2.000
|
1-217;297-405
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
46378.880
|
4.631
|
-19.500
|
30.861
|
10.048
|
47.847
|
52.153
|
13.636
|
17.225
|
51.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
876.394
|
896.068
|
1309.342
|
1065.496
|
925.004
|
569.195
|
936.346
|
413.176
|
1462.561
|
444.319
|
880.708
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.316
|
0.113
|
-0.188
|
-0.236
|
-0.686
|
0.729
|
-0.567
|
1.323
|
— | — | — | — | — |
No JSON data available for plots.